Skip to main content

Table 5 Counts of colorectal samples, positive (+) or negative (−) for identified viruses, in matched tumor/normal specimen pairs

From: Viral expression associated with gastrointestinal adenocarcinomas in TCGA high-throughput sequencing data

Sample type

Virus name

Matched control DNA N = 111 2 (blood:solid)

Adjusted pvalues for association

    

Tumors vs. all controls

Tumors vs. blood

Tumors vs. solid tissue

Tumor DNA

EBV

+

−

0.02

0.06

1

+

3 (3:0)

21 (19:2)

−

5 (5:0)

82 (64:18)

CMV

+

−

0.03

0.06

1

+

0

12 (11:1)

−

1 (1:0)

98 (79:19)

HHV-6B

+

−

1

0.98

0.07

+

4 (1:3)

8 (8:0)

−

10 (2:8)

89 (80:9)

HPV-18

+

−

-

-

-

+

0

0

 

−

0

0

   
  1. N, number of matched pairs. blood: solid, counts for the non-malignant samples by tissue type: whole blood and solid adjacent tissue, respectively.