Gene | Tag-SNP # | SNP ID | Asso-ciated allelea | Cases (HS) allele frequencies | Controls (HR) allele frequencies | P value (chi-square analysis) | P value, following 100 K permutations |
---|---|---|---|---|---|---|---|
AHR | 1 | rs62444550 | A | 0.433 | 0.419 | 0.7741 | 1.00 |
AHR | 2 | rs77821156 | A | 0.929 | 0.889 | 0.1553 | 0.7627 |
AHR | 3 | rs10250822 | C | 0.272 | 0.197 | 0.0693 | 0.4745 |
AHR | 4 | rs4719497 | C | 0.174 | 0.096 | 0.0200* | 0.1727 |
AHR | 5 | rs3757824 | T | 0.862 | 0.793 | 0.0613 | 0.4203 |
AHR | 7 | rs713150 | G | 0.263 | 0.197 | 0.1068 | 0.6212 |
AHR | 8 | rs17722841 | G | 0.817 | 0.798 | 0.6212 | 0.9998 |
AHR | 9 | rs2282885 | A | 0.665 | 0.591 | 0.1147 | 0.6360 |
AHR | 10 | rs2282883 | T | 0.397 | 0.343 | 0.2531 | 0.9128 |
AHR | 11 | rs4236290 | T | 0.902 | 0.874 | 0.3607 | 0.9774 |
AHR | 12 | rs2158041 | T | 0.250 | 0.212 | 0.3578 | 0.9742 |
AHR | 13 | rs3802082 | A | 0.884 | 0.838 | 0.1751 | 0.8056 |
AHR | 14 | rs7811989 | A | 0.295 | 0.253 | 0.3335 | 0.9620 |
AHR | 15 | rs2074113 | G | 0.942 | 0.914 | 0.2670 | 0.9201 |
AHR | 16 | rs2066853 | A | 0.107 | 0.091 | 0.5783 | 0.9996 |
CYP1A1 | 1 | rs4646903 | G | 0.125 | 0.086 | 0.1936 | 0.7207 |
CYP1A1 | 2 | rs2606345 | C | 0.397 | 0.354 | 0.3543 | 0.9355 |
CYP1A1 | 3 | rs3826042 | C | 0.960 | 0.939 | 0.3355 | 0.9121 |
CYP1A1 | 4 | rs7495708 | C | 0.205 | 0.177 | 0.4567 | 0.9711 |
CYP1A2 | 1 | rs2069514 | A | 0.089 | 0.030 | 0.0119 * | 0.0896 |
CYP1A2 | 2 | rs762551 | A | 0.723 | 0.717 | 0.8902 | 1.0000 |
CYP1A2 | 3 | rs2470890 | C | 0.438 | 0.354 | 0.0787 | 0.4071 |
CYP1A2 | 4 | rs17861162 | G | 0.076 | 0.040 | 0.1233 | 0.5885 |
CYP1B1 | 1 | rs162562 | G | 0.317 | 0.217 | 0.0212 * | 0.1262 |
CYP1B1 | 2 | rs1800440 | T | 0.862 | 0.818 | 0.2232 | 0.7441 |
CYP1B1 | 3 | rs1056837 | A | 0.478 | 0.460 | 0.7103 | 0.9998 |
CYP1B1 | 4 | rs1056836 | C | 0.482 | 0.460 | 0.6433 | 0.9979 |
CYP1B1 | 5 | rs1056827 | A | 0.317 | 0.273 | 0.3206 | 0.8683 |
CYP1B1 | 6 | rs10012 | C | 0.326 | 0.268 | 0.1922 | 0.6692 |
CYP1B1 | 7 | rs162558 | T | 0.821 | 0.758 | 0.1071 | 0.4914 |
CYP1B1 | 8 | rs2855655 | C | 0.562 | 0.551 | 0.8045 | 1.0000 |
CYP1B1 | 9 | rs162557 | A | 0.272 | 0.232 | 0.3459 | 0.9051 |
CYP1B1 | 10 | rs162556 | A | 0.567 | 0.525 | 0.3903 | 0.9346 |
CYP1B1 | 11 | rs162555 | T | 0.826 | 0.768 | 0.1367 | 0.5529 |
CYP1B1 | 12 | rs10175368 | C | 0.746 | 0.742 | 0.9417 | 1.0000 |