Gene | Tag-SNP # | SNP ID | Asso-ciated allelea | Cases (HS) allele frequencies | Controls (HR) allele frequencies | P value (chi-square analysis) | P value, following 100 K permutations |
---|---|---|---|---|---|---|---|
AHR | 1 | rs62444550 | A | 0.926 | 0.884 | 0.1598 | 0.741 |
AHR | 2 | AHR10SNP | A | 0.431 | 0.416 | 0.7654 | 1.00 |
AHR | 3 | rs10250822 | C | 0.282 | 0.205 | 0.0768 | 0.4705 |
AHR | 4 | rs4719497 | C | 0.188 | 0.100 | 0.0134 * | 0.1048 |
AHR | 5 | rs3757824 | T | 0.856 | 0.795 | 0.1069 | 0.6213 |
AHR | 7 | rs713150 | G | 0.272 | 0.205 | 0.1204 | 0.6554 |
AHR | 8 | rs17722841 | G | 0.797 | 0.795 | 0.9551 | 1.00 |
AHR | 9 | rs2282885 | A | 0.629 | 0.579 | 0.3139 | 0.9577 |
AHR | 10 | rs2282883 | T | 0.386 | 0.337 | 0.3102 | 0.9496 |
AHR | 11 | rs4236290 | T | 0.896 | 0.868 | 0.3958 | 0.9802 |
AHR | 12 | rs2158041 | T | 0.267 | 0.221 | 0.287 | 0.9119 |
AHR | 13 | rs3802082 | A | 0.876 | 0.842 | 0.3308 | 0.9603 |
AHR | 14 | rs7811989 | A | 0.302 | 0.263 | 0.3939 | 0.9776 |
AHR | 15 | rs2074113 | G | 0.941 | 0.921 | 0.4452 | 0.992 |
AHR | 16 | rs2066853 | A | 0.084 | 0.079 | 0.8506 | 1.00 |
CYP1A1 | 1 | rs4646903 | G | 0.104 | 0.084 | 0.5039 | 0.9866 |
CYP1A1 | 2 | rs2606345 | C | 0.351 | 0.337 | 0.7604 | 0.9999 |
CYP1A1 | 3 | rs3826042 | C | 0.955 | 0.937 | 0.4136 | 0.9446 |
CYP1A1 | 4 | rs7495708 | C | 0.158 | 0.153 | 0.8745 | 1.00 |
CYP1A2 | 1 | rs2069514 | A | 0.035 | 0.016 | 0.2365 | 0.8158 |
CYP1A2 | 2 | rs762551 | C | 0.292 | 0.279 | 0.7736 | 1.00 |
CYP1A2 | 3 | rs2470890 | C | 0.386 | 0.332 | 0.2606 | 0.8355 |
CYP1A2 | 4 | rs17861162 | G | 0.064 | 0.037 | 0.216 | 0.7605 |
CYP1B1 | 1 | rs162562 | G | 0.282 | 0.221 | 0.1639 | 0.6189 |
CYP1B1 | 2 | rs1800440 | T | 0.856 | 0.821 | 0.3404 | 0.8777 |
CYP1B1 | 3 | rs1056837 | G | 0.545 | 0.542 | 0.9612 | 1.00 |
CYP1B1 | 4 | rs1056836 | C | 0.460 | 0.458 | 0.9604 | 1.00 |
CYP1B1 | 5 | rs1056827 | A | 0.297 | 0.268 | 0.5298 | 0.9853 |
CYP1B1 | 6 | rs10012 | C | 0.302 | 0.263 | 0.3939 | 0.9263 |
CYP1B1 | 7 | rs162558 | T | 0.812 | 0.763 | 0.238 | 0.751 |
CYP1B1 | 8 | rs2855655 | C | 0.589 | 0.547 | 0.4043 | 0.9302 |
CYP1B1 | 9 | rs162557 | A | 0.277 | 0.242 | 0.4283 | 0.9473 |
CYP1B1 | 10 | rs162556 | A | 0.540 | 0.516 | 0.6369 | 0.9954 |
CYP1B1 | 11 | rs162555 | T | 0.817 | 0.774 | 0.2895 | 0.8232 |
CYP1B1 | 12 | rs10175368 | T | 0.277 | 0.258 | 0.6658 | 0.9985 |