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Table 2 Composition of the variant reference datasets used in this study. This table separates mutation catalogues into those derived from clinical databases (disease mutation catalogues) and those derived directly from functional assays (functional mutation catalogues). The table provides summary information for the numbers of proteins and variants of different classifications that have contributed to each dataset. See Additional file 1: Figure S1 and Table S1 for more detailed information

From: Variant effect prediction tools assessed using independent, functional assay-based datasets: implications for discovery and diagnostics

 

Total variants

Deleterious

Benign

Total proteins

Disease mutation catalogues

 ClinvarHC

29,752

19,461

10,291

2979

 Humsavar

43,878

19,329

24,549

10,231

 Swissvar

12,729

4526

8203

5036

 Varibench

10,266

4309

5957

4203

Functional mutation catalogues

 TP53-TA

1886

582

1304

1

 BRCA1-DMS

1683

408

1275

1

 UniFun

11,519

9503

2016

2209