Table 2 Top loci not found in other studies. Only independent SNPs clumped at r = 0.1 are shown
SNP | CHR | BP (GRCh37) | EAF | r0.001 lead? | cojo_index | Novel? | Nearest gene | Type |
|---|---|---|---|---|---|---|---|---|
rs28734019 | 1 | 90,800,573 | 0.998 | Yes | Yes | Yes | RNU6-695P | Intergenic |
rs61823703 | 1 | 159,542,164 | 0.987 | No | No | Yes | OR10AE1P | Intergenic |
rs539456851 | 1 | 158,731,459 | 0.982 | No | No | Yes | OR6N1 | Intergenic |
rs371178711 | 1 | 158,186,653 | 0.969 | No | No | Yes | RP11-404O13.5 | Intergenic |
rs146677619 | 1 | 158,995,984 | 0.991 | No | No | Yes | IFI16 | Intronic |
rs11576058 | 1 | 161,111,446 | 0.979 | No | No | Yes | UFC1 | Intergenic |
1:158777618_CT_C | 1 | 158,777,618 | 0.050 | No | No | Yes | OR10AA1P | Downstream |
rs183362544 | 2 | 97,045,902 | 0.998 | Yes | Yes | Yes | NCAPH | Intergenic |
rs11422063 | 1 | 159,799,599 | 0.022 | No | No | Yes | SLAMF8 | Intronic |
rs112483667 | 1 | 151,651,180 | 0.974 | No | No | Yes | SNX27 | Intronic |
rs12406899 | 1 | 157,540,651 | 0.911 | No | No | Yes | FCRL4 | Intergenic |
rs1103805 | 1 | 158,924,741 | 0.929 | No | No | Yes | PYHIN1 | Intronic |
rs557482905 | 5 | 80,629,499 | 0.998 | Yes | Yes | Yes | ACOT12 | Intronic |
rs527921556 | 6 | 160,605,701 | 0.996 | Yes | Yes | Yes | SLC22A2 | Intronic |
rs10096834 | 8 | 116,281,087 | 0.573 | Yes | No | Yes | TRPS1 | Intergenic |
rs140048432 | 9 | 17,700,893 | 0.996 | Yes | Yes | Yes | SH3GL2 | Intronic |
rs530475031 | 12 | 48,810,860 | 0.998 | Yes | Yes | Yes | C12orf54 | Intronic |
rs558204720 | 16 | 59,472,815 | 0.998 | Yes | Yes | Yes | LOC105371298 | Intronic |
rs138163369 | 18 | 6,492,075 | 0.998 | Yes | No | Yes | CTD-2124B20.2 | Intergenic |