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Table 1 Biallelic loci typed in CEPH pedigrees

From: Characterisation of SNP haplotype structure in chemokine and chemokine receptor genes using CEPH pedigrees and statistical estimation

Haplo- type position

Gene

NCBI locus link

Nucleotide/AA position

NCBI genbank number

NCBI contig

Contig position

NCBI dbSNP ss#

Allele 1

CEPH GP frequency

3p2l

         

1

CCR3

1232

Y17Y, A/G

NM_001837

NT_05827

3997337

4987053

A

0.907

 

CCR2

1231

- 5983 G/A

U95626

NT_05827

4083672

 

G

1

2

CCR2

1231

- 5048 G/T

U95626

NT_05827

4084607

3918357

G

0.892

 

CCR2

1231

- 4866 C/G

U95626

NT_05827

4084789

3918370

C

1

3

CCR2

1231

- 3433 T/C

U95626

NT_05827

4086222

3092964

T

0.802

4

CCR2

1231

V64I, C/T

NM_000647

NT_05827

4089845

1799864

C

0.898

5

CCR2

1231

N260N, A/G

NM_000647

NT_05827

4090435

1799865

A

0.696

6

CCR5

1234

208 C/A

NM_000579

NT_05827

4102477

2734648

G

0.631

7

CCR5

1234

303 C/T

NM_000579

NT_05827

4102572

1799987

G

0.524

8

CCR5

1234

676 T/C

NM_000579

NT_05827

4102945

1800023

A

0.631

9

CCR5

1234

L55Q, T/A

NM_000579

NT_05827

4105194

1799863

T

0.976

10

CCR5

1234

D32

NM_000579

NT_05827

  

NODEL

0.905

11

CCRL2

9034

1243V, C/T

NM_003965

NT_05827

4140934

3204850

C

0.902

 

CCRL2

9034

1137 C/G

NM_003965

NT_05827

4141344

 

C

1

17q11-12

         

1

MCP-1(CCL2)

6347

- 362 C/G

M37719

NT_010799

7315787

2857656

C

0.718

2

EOTAXIN (CCL11)

6356

- 1382 C/T

Z92709

NT_010799

7345226

4795895

C

0.777

3

RANTES (CCL5)

6352

- 8147 A/G

NM_002985

NT_010799

8932972

 

A

0.903

4(1)

MPIF-1 (CCL23)

6368

M106V, G/A

U85767

NT_010799

9074064

1003645

A

0.832

5(2)

PARC (CCL18)

6362

- 116 C/T

AB012113

NT_010799

9125397

2015086

C

0.662

6(3)

PARC (CCL18)

6362

81 G/A

AB012113

NT_010799

9125563

2015070

G

0.97

7(4)

PARC (CCL18)

6362

311 C/A

AB012113

NT_010799

9125793

2015052

A

0.922

8(5)

PARC (CCL18)

6362

6793 A/G

AB012113

NT_010799

9132275

14304

G

0.909

9(6)

MIP-1A (CCL3)

6348

- 1541 T/C

M23178

NT_010799

9152727

1634497

A

0.705