Characterisation of SNP haplotype structure in chemokine and chemokine receptor genes using CEPH pedigrees and statistical estimation

Table 4 Comparison of MLOCUS estimated to pedigree-phased haplotypes (n = 96) for six SNPs in 79 kb 'core' region of 17q11-12

No.	HAPLOTYPE	GP count	Frequency	MLOCUS	Similarity index	MSE
1	111111	85	0.4427	0.4519	0.0092	0.00008
2	111122	46	0.2396	0.2632	0.0236	0.00056
3	211111	20	0.1042	0.0934	0.0108	0.00012
4	111121	12	0.0625	0.0610	0.0015	0.00000
5	122111	10	0.0521	0.0503	0.0018	0.00000
6	211122	6	0.0313	0.0148	0.0164	0.00027
7	221211	4	0.0208	0.0254	0.0045	0.00002
8	111112	3	0.0156	0.0063	0.0093	0.00009
9	121211	2	0.0104	0.0046	0.0058	0.00003
10	222111	2	0.0104	0.0174	0.0070	0.00005
11	121212	1	0.0052	0.0065	0.0013	0.00000
12	122122	1	0.0052	0.0000	0.0052	0.00003
13	211112	0	0.0000	0.0052	0.0052	0.00003
		192	1.0000	1.0000	0.9491	0.00010

Those haplotypes that are only present in the MLOCUS estimation results are denoted in italics.

ISSN: 1479-7364