Table 2 Allele frequencies of all loci typed in I I population samples
From: Haplotype structure and linkage disequilibrium in chemokine and chemokine receptor genes
| Â | Mende (n= 96) | Temne (n= 95) | Afr-Amer-(n= 107) | Euro-Amer-(n= 133) | Hispanic (n= 24) | Mixteca (n= 57) | Mixe (n= 37) | Zapotec (n= 45) | Chinese (n= 31) | Indonesians (n= 50) | PNG (n= 49) |
|---|---|---|---|---|---|---|---|---|---|---|---|
SNP allele 1 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
CCR3(YI7Y_A) | 0.865 | 0.872 | 0.924 | 0.904 | 0.938 | 0.91 1 | 1.000 | 0.953 | 0.967 | 0.978 | 1.000 |
CCR2(-5983 G) | 0.716 | 0.683 | 0.807 | 1.000 | 0.957 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
CCR2(-5048 G) | 0.847 | 0.858 | 0.819 | 0.901 | 0.792 | 0.746 | 0.649 | 0.71 1 | 0.783 | 0.932 | 0.847 |
CCR2(-4866 C) | 0.699 | 0.621 | 0.745 | 0.996 | 1.000 | 0.974 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
CCR2(-3433 T) | 0.927 | 0.963 | 0.916 | 0.785 | 0.708 | 0.728 | 0.778 | 0.800 | 0.733 | 0.939 | 0.781 |
CCR2(64V_C) | 0.941 | 0.922 | 0.840 | 0.904 | 0.826 | 0.750 | 0.649 | 0.71 1 | 0.808 | 0.955 | 0.826 |
CCR2(N260N_T) | 0.637 | 0.580 | 0.646 | 0.682 | 0.667 | 0.536 | 0.757 | 0.716 | 0.710 | 0.755 | 0.910 |
CCR5(208 G) | 0.620 | 0.632 | 0.676 | 0.639 | 0.625 | 0.640 | 0.797 | 0.778 | 0.484 | 0.538 | 0.850 |
CCR5(303 G) | 0.321 | 0.245 | 0.412 | 0.533 | 0.583 | 0.500 | 0.797 | 0.733 | 0.446 | 0.525 | 0.847 |
CCR5(676 A) | 0.941 | 0.962 | 0.883 | 0.643 | 0.667 | 0.643 | 0.797 | 0.767 | 0.516 | 0.700 | 0.850 |
CCR5(55L_T) | 1.000 | 1.000 | 0.995 | 0.978 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
CCR5(+32) | 1.000 | 0.995 | 0.962 | 0.891 | 0.979 | 1.000 | 1.000 | 0.978 | 1.000 | 1.000 | 1.000 |
CCRL2(243I_C) | 1.000 | 1.000 | 0.986 | 0.907 | 0.957 | 0.904 | 1.000 | 0.933 | 0.952 | 0.979 | 1.000 |
CCRL2(II37C) | 0.700 | 0.658 | 0.794 | 0.996 | 0.979 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
MCP-I(-362C) | 0.521 | 0.532 | 0.570 | 0.713 | 0.708 | 0.300 | 0.108 | 0.227 | 0.433 | 0.510 | 0.710 |
EOTAXIN(-l382C) | 0.995 | 0.994 | 0.949 | 0.776 | 0.848 | 0.991 | 0.986 | 0.988 | 0.919 | 0.904 | 0.860 |
MIP-la(--1541 A) | 0.816 | 0.830 | 0.801 | 0.728 | 0.771 | 0.792 | 0.757 | 0.739 | 0.638 | 0.633 | 0.826 |
PARC(6793 G) | 0.984 | 0.989 | 0.953 | 0.699 | 0.761 | 0.789 | 0.608 | 0.716 | 0.650 | 0.670 | 0.820 |
PARC(3 1 1 A) | 0.696 | 0.676 | 0.745 | 0.970 | 0.938 | 1.000 | 1.000 | 1.000 | 0.950 | 0.938 | 0.833 |
PARC(81 G) | 0.977 | 0.968 | 0.947 | 0.922 | 0.792 | 0.825 | 0.736 | 0.644 | 0.919 | 0.867 | 0.419 |
PARC(-116C) | 0.615 | 0.606 | 0.607 | 0.906 | 0.729 | 0.825 | 0.730 | 0.644 | 0.897 | 0.798 | 0.274 |
MPIF-1(106M_A) | 0.047 | 0.064 | 0.260 | 0.800 | 0.739 | 0.769 | 0.770 | 0.889 | 0.633 | 0.567 | 0.276 |
CX3CR1(249V_G) | 0.891 | 0.921 | 0.868 | 0.724 | 0.761 | 0.750 | 0.750 | 0.800 | 0.984 | 0.919 | 0.784 |
CX3CR1(280T_G) | 0.990 | 1.000 | 0.958 | 0.842 | 0.875 | 0.804 | 0.757 | 0.81 1 | 0.983 | 0.889 | 0.796 |
ENA(Q56Q_A) | 0.521 | 0.500 | 0.605 | 0.890 | 0.938 | 0.873 | 0.905 | 0.898 | 0.962 | 0.830 | 0.631 |
GROI(I086G) | 0.995 | 1.000 | 0.881 | 0.313 | 0.521 | 0.632 | 0.527 | 0.636 | 0.532 | 0.378 | 0.510 |
GRO1(1176 C) | 0.737 | 0.720 | 0.778 | 0.996 | 1.000 | 1.000 | 1.000 | 0.989 | 1.000 | 1.000 | 0.990 |
IP 10 (503 C) | 0.734 | 0.814 | 0.678 | 0.553 | 0.771 | 0.945 | 0.971 | 0.942 | 0.967 | 0.875 | 0.792 |