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Table 3 Distribution of χ2 test scores in SNPs selected for individual genotyping.

From: Application of pooled genotyping to scan candidate regions for association with HDL cholesterol levels

  All SNPs Conforminga Non-conformingb
Selected SNPs 284 142 142
Number meeting quality criteria 263 135 128
p < 0.04c 90 59 31
p < 0.01c 41 24 17
  1. a SNPs selected based on corroborating evidence from the haplotype-fitting procedure.
  2. b SNPs selected based on a large Δ p ^ but without supporting haplotype information.
  3. c SNPs meeting this threshold in a χ2 test of allelic association with the HDL phenotype.
  4. SNPs, single nucleotide polymorphisms.