Skip to main content

Table 4 SNPs having significant association with HDL cholesterol in the study population.

From: Application of pooled genotyping to scan candidate regions for association with HDL cholesterol levels

Chromosome Positiona dbSNP refLb altL refH altH Δpc χ 2 pvalue
16 56729856 rs1800775 392 196 288 322 0.193 46.2 1.1 × 10-11
16 56730908 rs708272 446 234 318 320 0.151 33.5 7.2 × 10-9
16 56730831 rs711752 451 239 314 312 0.165 31.2 2.4 × 10-8
16 56733948 rs11508026 441 227 303 289 0.167 28.6 9.1 × 10-8
16 56739509 rs7205804 436 244 312 318 0.146 28.4 9.7 × 10-8
16 56740998 rs11076175 535 155 563 73 -0.101 28.1 1.2 × 10-7
  1. a Position on GenBank sequence NC_000016.4.
  2. b Counts of reference and alternate alleles for low and high HDL cholesterol groups.
  3. c Allele frequency difference, calculated as refL /(refL + altL) - refH /(refH + altH).
  4. dbSNPs single nucleotide polymorphism database; HDL, high-density lipoprotein.