Software for tag single nucleotide polymorphism selection

Table 2 Tag single nucleotide polymorphisms (SNPs) selected for TGFBR1

Program	Block definition	Tag criteria	Tag SNPs in block 1, as defined by Haploview	Tag SNPs in block 2, as defined by Haploview	htSNPs not in blocks, as defined by Haploview
LDSelect	N/A	Pairwise R²	1, 2	5, 6, 7, 13	4, 15
Haploview	Gabriel default^a	Not stated	1, 2	5, 6, 7, 13	N/A
htSNP	Used results of Haploview	$R_{s}^{2}$	1, 2	5, 7, 8, 13	N/A
TagIT	Used results of Haploview	$R_{s}^{2}$	1, 2	5, 6, 13, 14	N/A
tagSNPs	Used results of Haploview	$R_{h}^{2}$	1, 2	5, 6, 13	N/A
		$R_{s}^{2}$	1, 2	5, 7, 8, 13	N/A
Hapblock	Empirical LD option^b	$R_{h}^{2}$	1, 2	5, 9, 13	4
		I _e	1, 2	5, 7, 13	4
		Pairwise R²	1, 2	5, 6, 7, 13	4, 15
Tagger	N/A	Pairwise R²	2, 3	5, 6, 10, 13	4, 15
		Restricted $R_{s}^{2}$	2, 3	5, 10, 13	4, 15

ISSN: 1479-7364