Table 4 Phylogenetic analysis by maximum likelihood (PAML) models from analysis of sequence data from the CAR, PXR, VDR, FXR and TRα genes (values in parentheses indicate percentage of codons falling in a particular ω category).
PAML model | |
|---|---|
CAR (NR1I3) | Â |
Full sequence | M3, ω = 0.03 (51%), 0.47 (49%) |
DBD only | M0, ω = 0.1598 |
LBD only | M3, ω = 0.06 (68%), 0.72 (32%) |
VDR (NR1I1) | Â |
Full sequence | M3, ω = 0.00001 (77%), 0.333 (23%) |
DBD only | M0, ω = 0.0085 |
LBD only | M3, ω = 0.00001 (67%), 0.32 (33%) |
PXR (NR1I2) | Â |
Full sequence | M3, ω = 0.049 (79%), 0.666 (21%) |
DBD only | M0, ω = 0.0441 |
LBD only | M3, ω = 0.01 (51%), 0.26 (42%), 1.23 (7%) |
TRα (NR1I2) |  |
Full sequence | M0, ω = 0.02 |
DBD only | M0, ω = 0.0001 |
LBD only | M0, ω = 0.01 |
FXR (NR1H4) | Â |
Full sequence | M3, ω = 0.00001 (72%), 0.22 (28%) |
DBD only | M0, ω = 0.0137 |
LBD only | M3, ω = 0.00001 (83%), 0.295 (17%) |