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Table 1 Genes overlapping linkage and association analyses for carboplatin

From: Whole-genome approach implicates CD44in cellular resistance to carboplatin

1 LOD confidence interval

1 LOD confidence interval (cM)

Max LOD (cM)

Phenotype (μM)

No. of genes in 1 LOD interval

Associated gene; SNP (pvalue)a

Function

1p36.32-36.22

6-23

1.64 (15)

10

69

  

1p21.1-p13.1

137-150

1.75 (144)

10

130

  

2q33.3-q36.3

203-228

3.28 (220)

IC50

127

  

4q27-q32.1

127-157

1.66 (133)

80

118

  

5q14.3-q22.1

95-116

1.88 (112)

80

63

  

8q22.2-q24.21

114-136

1.56 (128)

IC50

92

BAALC; rs2201369 (9.12 × 10-11)

Neuroectoderm/haematopoietic development

8q24.13-q24.22

158-170

2.09 (169)

80

26

  
 

158-170

1.87 (169)

IC50

26

C8orf76; rs17378130 (1.48 × 10-5)

 
 

154-170

1.65 (165)

20

30

  
 

155-170

1.61 (168)

40

27

  

9q31.3-q33.3

118-136

1.59 (126)

80

122

  
 

118-134

1.58 (126)

40

84

  

11p13-p12

42-53

2.54 (46)

IC50

23

CD44; rs7116432 (1.51 × 10-6)

Cell adhesion

     

LRRC4C; rs4375425 (3.24 × 10-7)

G protein-mediated signalling, cell adhesion

     

DKFZP586H2123; rs17727535 (3.63 × 10-12)

Serine protease

11q14.3-q23.3

91-113

3.36 (99)

IC50

151

CNTN5; rs1441382 (2.57 × 10-7)

Cell adhesion

     

IGSF4; rs11215437 (2.82 × 10-7)

Cell adhesion

     

PAK1; rs478134 (1.07 × 10-5)

Protein serine/threonine kinase activity

 

94-117

1.57 (109)

10

208

  

14q21.2-q24.1

51-80

1.64 (66)

10

134

  
  1. aGenes that overlapped linkage and association analyses for the IC50 phenotype. Association was performed on linkage regions with logarithm of odds (LOD) > 1.5 thresholds and significant single nucleotide polymorphisms (SNPs) met p < 1 × 10-4 and false discovery rate < 5 per cent thresholds. Only the most significant SNPs are listed. Abbreviation: cM, centimorgan.