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Table S5 Polymerase chain reaction and sequencing primers

From: Novel variants of major drug-metabolising enzyme genes in diverse African populations and their predicted functional effects

Gene

Exon

First PCR primers

Sequencing primers

CYP2C9

5' UTR

cyp2C9- 5'FLF ATCCTCAACTCAGTATGTCAGC

cyp2C9- 5'FLSF1 ATCCTCAACTCAGTATGTCAGC

  

cyp2C9-5'FLR ATCACCTAGGTCCACTATATGC

cyp2C9- 5'FLSR1 ACCTTTACCATTAAACCCCC

   

cyp2C9- 5'FLSF2 CAATTCCTGCCTTCAGGA

   

cyp2C9- 5'FLSR2 AAGGACTTTGACCCACTGAT

 

1

cyp2C9-1F GGAATGTACAGAGTGGACAATGG

 
  

cyp2C9-1R GATCCCACAATACCTTACCATTTAC

 
 

2&3

cyp2C9-2&3F

 
  

GACCTGCTGAATATGTTGATGTG

cyp2C9- 2SF TCTTGAACTCCTGACCTTGT

  

cyp2C9-2&3R CCCGCTTCACATGAGCTAAC

cyp2C9- 2SR GGAGCTCTGTAAGTCTCTGT

   

cyp2C9- 3SF AGGAGTTTTCTGGAAGAGG

   

cyp2C9- 3SR GGAAAAACACTGCTCTTTAACTC

 

4*

cyp2C9-4F CAGCTAGGTTGTAATGGTCAACTC

***

  

cyp2C9-4R GCTAATGGGCTTAGAAATCAGG

 
 

5*

cyp2C9-5F TCATCTGGTTAGAATTGATCCTCTG

***

  

cyp2C9-5R GCTATTAACTACCGCCTCAACTTC

 
 

6*

cyp2C9-6F GAGGAAATGGACCTAGAGACCTTC

***

  

cyp2C9-6R CCCATTGTAATCACCATTAGTTTG

 
 

7*

cyp2C9-7F GTGCATCTGTAACCATCCTCTCT

***

  

cyp2C9-7R

 
  

CAGACACTAGGACCTGTTACAAACC

 
 

8*

cyp2C9-8F AGAAGGTTGCATCCAAGTATCC

***

  

cyp2C9-8R GAGTTCTTGGGTACCTCACTGGT

 
 

9

cyp2c9-9F CTCATCCATCCATTCATTCATG

cyp2c9-9SF CTCATCCATCCATTCATTCATG

  

cyp2c9-9R CTCTAACACTCACCCAAAATAGC

cyp2c9-9SR CGAATGTTCACTAGATCTTCAG

   

cyp2c9-9S2F CTGCAGCTCTCTTTCCTC

   

cyp2c9-9S2FR CTCTAACACTCACCCAAAATAGC

CYP2C19

   
 

1

cyp2C19-1F CAATTATGACGGTGCATTGG

***

  

cyp2C19-1R CACTTCCCTTACTGTTTACCCTCA

 
 

2&3

cyp2C19-2&3F

cyp2C19-2SF AATTCAGAAATATTTGAGCCTGTGTG

  

GTTCTTGAAGCTGGGTATTTGTC

cyp2C19-2SR GGTTTTTCTCAACTCCTCCACAA

  

cyp2C19-2&3R

cyp2C19-3SF GCCTGGGATCTCCCTCCTAGTTT

  

AGCAAAGTTCAGGAGAACATAGG

cyp2C19-2&3R AAGCAAAGTTCAGGAGAACATAGG

 

4

cyp2C19-4F

***

  

CAGCTAGGCTGTAATTGTTAATTCG

 
  

cyp2C19-4R

 
  

GAGTAATGGAAGACTCCAAAGTGC

 
 

5

cyp2C19-5F TTCAATTTCAGAGGCTGCTTG

***

  

cyp2C19-5R

 
  

CTATGATGCTTACTGGATATTCATGC

 
 

6

cyp2C19-6F

***

  

CAGCATATAAACAGAGCCAAAGAC

 
  

cyp2C19-6R

 
  

ACACCATTAAATTGGGACAGATTAC

 
 

7

cyp2C19-7F

***

  

CCTAGCTTAAGGCACAGTTACACA

 
  

cyp2C19-7R

 
  

GAAAGACTCAAGGTGTCAAGATGTC

 
 

8

cyp2C19-8F

***

  

GCCTTAAGCTCATGCCTCTTATTAC

 
  

cyp2C19-8R

 
  

GGCAGAATTCAACCAACCTATACTT

 
 

9

cyp2C19-9F TCATTGTTTAGTTGCCTATCCATC

***

  

cyp2C19-9R CCATCTTCACCTTTGTCCTTTC

 

CYP2D6

   
 

1&2

cyp2D6ex1_2FACCAGGCCCCTCCACCGG

CYP2D6ex1_2FACCAGGCCCCTCCACCGG

  

cyp2D6ex1_2RCTCTCTGCCCAGCTCGG

cyp2D6ex1SR

   

GTTTCACCCACCACCCATGTTT

   

cyp2D6ex2SF

   

CTTCCACCTGCTCACTCCTGGTA

   

cyp2D6ex2SR

   

CCTCCCTAGTGCAGGTGGTTTCT

 

3&4

cyp2D6ex3_4FATTTCCCAGCTGGAATCC

cyp2D6ex3_4SF

   

GAGCATAGGGTTGGAGTGGGTG

  

cyp2D6ex3_4RGAGACTCCTCGGTCTCTC

cyp2D6ex3_4RGAGACTCCTCGGTCTCTC

 

5&6

cyp2D6ex5_6FGCCTGAGACTTGTCCAGG

cyp2D6ex5_6FGCCTGAGACTTGTCCAGG

  

cyp2D6ex5_6RCCGGCCCTGACACTCCTTCT

cyp2D6ex5_6RCCGGCCCTGACACTCCTTCT

 

7,8,9

cyp2D6ex7_9FGGATCCTGTAAGCCTGACCTC

cyp2D6ex7_9FGGATCCTGTAAGCCTGACCTC

  

cyp2D6ex7_9R

cyp2D6ex7SR

  

ACTGAGCCCTGGGAGGTAGGTAG

GTGGTGGCATTGAGGACTAGGTG

   

cyp2D6ex8SF

   

GTCCAGAGTATAGGCAGGGCTGG

   

cyp2D6ex8SR

   

AGCACAAAGCTCATAGGGGGATG

   

cyp2D6ex9SF

   

CTTCCTCTTCTTCACCTCCCTGC

   

cyp2D6ex9SR

   

AATATGGGCCTCCAGGCTGAGT

NAT2

2

NAT2ex2FGAAGCATATTTTGAAAGAATTGG

NAT2ex2FGAAGCATATTTTGAAAGAATTGG

  

NAT2ex2RGCATTTTAAGGATGGCCTGT

NAT2SF1 TGCCAAAGAAGAAACACCAA

   

NAT2SR2 ACCTCGAACAATTGAAGATTTTGA

   

NAT2ex2RGCATTTTAAGGATGGCCTGT

  1. ***same set of primers used for sequencing.