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Table 1 Amplicons seen in the V1 and V1_V2 regions for samples

From: Combination of 16S rRNA variable regions provides a detailed analysis of bacterial community dynamics in the lungs of cystic fibrosis patients

Sample

V1_V2 (%)*†

Total #

V1_V2

V1†

Total # V1

UMA

342, 349 (39.0), 350

3

60, 62, 63, 65, 68, 69, 70, 72, 73, 75, 76, 77, 78, 81, 82, 83, 86 (17.3), 90, 91, 92, 93, 94,96, 98, 100, 101, 108

27

UMB

342 (61.7), 347, 365

3

62, 63, 72, 73, 75, 76, 77, 78, 81, 82, 88 (15.7), 91, 93, 94, 98, 100, 102, 103, 112

19

UMC

335, 342 (79.0), 347, 349,

350, 351, 352, 365

8

61, 62, 68, 69, 70, 72, 73, 75, 76, 77, 78, 81, 82, 84, 86, 88 (12.0), 90, 91, 92, 93, 94, 96, 98, 100, 102, 104

26

UMD

342 (93.7), 351, 352, 365

4

64 (14.4), 70, 73, 77, 82, 86, 88, 98, 103, 112

10

UME

342 (99.0), 348

2

60, 62, 64, 66, 67, 68, 69, 71, 72 (12.3), 73, 74, 75, 76, 77, 78, 80, 81, 86, 88, 91, 93, 94, 98, 100, 102, 103, 112, 113, 115, 120

30

UMF

342 (100)

1

60, 61, 62, 65, 68, 70, 72 (12.6%), 73, 75, 77, 78, 85, 91, 93, 94, 98, 103, 112, 113, 115

20

UMG

342 (100)

1

60, 61, 62, 68, 72 (3.6), 73, 75, 77, 78, 86, 91, 93, 98, 103, 112, 113, 115, 119, 120

19

UMH

342 (100)

1

60, 61, 62, 65, 68, 70, 73, 75, 76, 77 (3.9), 78, 80, 81, 84, 85, 86, 88, 90, 91, 93, 94, 96, 98, 101, 103, 111, 112, 113, 115

29

UMJ

342 (100)

1

60, 61, 62, 63, 65, 68, 70, 72, 73, 75, 77, 78, 80, 81, 84, 86, 88, 91, 92, 93, 94, 98, 102(6.6), 112, 113, 115, 120

27

UMK

342 (100)

1

60, 61, 62, 65, 67, 68, 70, 72, 73, 75, 77, 78, 81, 85, 86, 90, 91, 93, 94, 98, 100, 101 (7.3), 103, 111, 112, 113, 120

27

UML

342, 350, 360 (55.7), 365

4

60, 61, 62, 63, 64, 65, 67, 68, 70, 71, 72, 73, 76, 78, 81, 85, 88, 91, 94 (31.3), 98, 100, 102, 103, 112, 113, 115, 119, 120

28

UMM

342 (98.7), 351, 365

3

61, 62, 65, 68, 70, 73, 75, 76, 77, 78, 81, 82, 84, 86, 88, 91, 94, 98, 101 (4.8), 103, 111, 113, 115, 119, 120

25

UMN

339, 342 (92.7), 347, 352

4

60, 61, 62, 65, 68, 70 (10.2), 73, 77, 78, 81, 85, 86, 88, 90, 91, 92, 94, 98, 100, 103, 108, 112, 113, 115

24

UMO

342 (74.0), 350, 352

3

60, 62, 65, 73, 77, 78, 80, 81, 85, 91, 98, 102 (3.1), 103, 108, 111, 112, 113, 115, 119, 120

20

UMP

342 (100)

1

60, 61, 62, 65, 77, 78, 81, 98, 102 (5.7), 112, 115, 120

12

UMQ

342 (41.3), 348, 350, 365

4

60, 61, 62, 63, 64, 65, 71, 72, 76, 78, 81, 84, 85, 87, 91, 94, 98, 102 (5.3), 103, 112, 115

21

UMR

342, 360 (63.7)

2

60, 62, 63, 65, 73, 77, 78, 80, 81, 82, 85, 94 (13.9), 98, 102, 108, 112, 115, 120

18

UMS

339, 342 (87.7), 347

3

60, 62, 63, 66, 72, 73, 74, 77, 78, 80, 81, 85, 88, 91, 94, 98, 102 (9.9), 103, 111, 112, 113, 115, 119, 120

24

UMT

342 (100)

1

60, 62, 63, 65, 71, 72, 73, 76, 78, 81, 85, 92, 94, 98, 102 (13.2), 111, 112, 115, 120

19

  1. *The V1_V2 region ranges from 300-400 bp. The V1 region ranges from 60-120 bp.
  2. †Amplicons in bold are the most abundant amplicon in the profile for that particular sample. The number in parenthesis indicates the percentage abundance of the dominant amplicon for that region.
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Human Genomics

ISSN: 1479-7364