Table 1 The number of common peaks identified by the three ChIP-seq analytical tools for Stat1 experimental data
From: A short survey of computational analysis methods in analysing ChIP-seq data
Prediction | Predictions within 200 bp | |||
|---|---|---|---|---|
| Â | Spp | PeakSeq | CisGenome | Known Stat1 binding sites (stimulated) |
Spp | - | 2633 (97%) | 1640 (60%) | 17/28 (61%) |
PeakSeq | 2579 (46%) | - | 1671 (30%) | 19/28 (68%) |
CisGenome | 1611 (96%) | 1677 (100%) | - | 12/28 (43%) |