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Table 2 The number of common peaks identified by the three ChIP-seq analytical tools for PolII experimental data

From: A short survey of computational analysis methods in analysing ChIP-seq data

Prediction

Support

< 1 kbp

 

Spp

PeakSeq

CisGenome

From TSS

From TES

Spp

-

15,606 (96%)

8866 (55%)

12,135 (75%)

790 (5%)

PeakSeq

10,507 (74%)

-

7541 (53%)

9550 (67%)

1181 (8%)

CisGenome

8203 (89%)

8961 (97%)

-

7654 (83%)

454 (5%)