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Table 5 Links available from the various databases

From: Difficulties in finding DNA mutations and associated phenotypic data in web resources using simple, uncomplicated search terms, and a suggested solution

Links

HGMD

OMIM

dbSNP

MUTdba

MutView

GeneCardsb

GeneRev

dbGaP

UniProt

Ensembl

DGV

PAHdbc

InSiGHT

BIC

OMIM

*

    

*

*

 

*

*

 

*

*

 

GDB

*

          

*

  

NCBI

  

*

*

 

*

 

*

 

*

 

*

 

*

EntrezGene

*

*

   

*

*

  

*

  

*

*

GeneCards

*

          

*

  

GenAtlas

*

    

*

        

JSNP

*

             

GAD

*

*

   

*

        

FINDbase

*

             

GeneClinics

*

          

*

  

SwissProt

*

  

*

 

*

*

  

*

 

*

  

TrEMBL

     

*

   

*

    

LSDB

*

*

  

*

*

*

       

Coriell

 

*

            

HGVS

 

*

            

HGMD

 

*

   

*

*

    

*

*

 

Genage

 

*

            

HGNC

*

*

   

*

*

  

*

    

dbGaP

   

*

          

PharmGKB

   

*

 

*

        

SeattleSNPs

   

*

          

UCSC

   

*

 

*

     

*

  

Ensembl

   

*

 

*

        

GeneTests

     

*

      

*

 

UniGene

     

*

   

*

    

WikiGene

     

*

   

*

    

RCSB

           

*

  

BIOPKU

           

*

  

THBdb

           

*

  

WoodsMMR

            

*

 

MMRUV

            

*

 

HapMap

     

*

    

*

   

DECIPHER

          

*

   

dbRIP

              

HSVD

              

CAC

              

PDB

         

*

    

IPI

         

*

    
  1. *Indicates link available.
  2. aAdditional links specific to MUTdb: SIFT; PolyPhen; LS-SNP; SNPs3D; PolyDoms; Panther; PMut; SNPEffect; FASTSNP.
  3. bAdditional links specific to GeneCards: GeneLoc; dbSNP; AKS; HuGE; AceView; euGenes; miRbase; ECGene; H-InvDB; ATLAS; HORDE; IMGT; Leiden; GeneRev; Navigator; BCGD; TGDB; Pupasuite; Homologene; Pseudogene; SGD; MGI; Flybase; Wormbase; GeneDecks; GeneNote; GNF SynAtlas; GeneAnnotation; GeneTide; SAGE tags; CGAP; Source; GNF BioGPS; ExpoldeB; RNAdb; ASD; BioMol; MINT; String; Kegg; IntAct; Phosphosite; Proteopedia; OCA; ProtoNet; BLOCKS; InterPro.
  4. cAdditional links specific to PAHdb: Cell bank; The Waystation; PHEXdb; CASRdb; HEXdb; CYSdb; Human Genome Variation Society (nomenclature guidelines).
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Human Genomics

ISSN: 1479-7364