From: Neurofibromatosis type 1-associated tumours: Their somatic mutational spectrum and pathogenesis
Patient ID | Germline mutation | Type of germline mutation | LOH | LOH markers | Predicted extent of LOH | Evidence for genomic deletion? MLPA/CGHarrayCGH/FISH | Probable mechanism | No. samples with LOH | Reference |
---|---|---|---|---|---|---|---|---|---|
Dermal neurofibromas | Â | Â | Â | Â | Â | Â | Â | Â | |
T190.2 | Exon 2 and 3 deletion | Two exon deletion | Yes | E5 RFLP, I12b, IVS27A28.4, J1/J2, EVI20, IVS38GT53.0, 3'NF1, C7CT1/2 (3'UTR), EW206, EW207, D17S798, D17S1868 | NF1 and 3' flanking region | MLPA | Deletion | 5/23 | 1 |
T190.6 | Â | Â | Yes | E5 RFLP, I12b, IVS27A28.4, J1/J2, EVI20, IVS38GT53.0, 3'NF1, C7CT1/2 (3'UTR), EW206 | NF1 and 3' flanking region | MLPA | Deletion | Â | Â |
T190.11 | Â | Â | Yes | E5 RFLP, I12b, IVS27A28.4, J1/J2, EVI20, IVS38GT53.0, 3'NF1, C7CT1/2 (3'UTR) | NF1 and 3' flanking region | MLPA | Deletion | Â | Â |
T190.17 | Â | Â | Yes | E5 RFLP, I12b, IVS27A28.4, J1/J2 | Intragenic NF1 | MLPA | Deletion | Â | Â |
T190.18ii | Â | Â | Yes | E5 RFLP | Intragenic NF1 | MLPA | Deletion | Â | Â |
T206.1 | Ex4b: c.499_502delTGTT; p.C167GnfsX9 | 4 bp deletion (FS) | Â | LOH | Â | NIA | Â | Â | Unpublished data, Cardiff |
T206.2 | Â | Â | Â | LOH | Â | Â | Â | Â | Â |
T206.3 | Â | Â | Â | LOH | Â | Â | Â | Â | Â |
L002_3 | Ex9: c.1246C > T; p.Arg416X | Nonsense | Yes | rs29001484, rs4583306, NF1 germline mutation, rs2055091, rs11869264 | NF1 | Array CGH | Deletion | 6/28 | 2 |
L002_5 | Â | Â | Yes | rs29001484, rs4583306, NF1 germline mutation, rs2055091, rs11869264 | NF1 | Array CGH | Mitotic recombination | Â | Â |
L002_12 | Â | Â | Yes | rs29001484, rs4583306, NF1 germline mutation, rs2055091, rs11869264 | NF1 | Array CGH | Mitotic recombination | Â | Â |
L002 C | Â | Â | Yes | NS | Â | NIA | Â | 3/38 | 3 |
T473.1A | Ex10b: c.1413- 1414delAG; p.Lys471AsnfsX4 | 2 bp deletion (FS) | Yes | HHH202, J1J2, IVS27, EV120, IVS38 | NF1 | MLPA | Mitotic recombination | 22/89 | 4 |
T473.1C | Â | Â | Yes | HHH202, J1J2, EV120 | NF1 | MLPA | Mitotic recombination | Â | Â |
T473.3 | Â | Â | Yes | J1J2, EV120, IVS38 | NF1 | MLPA | Mitotic recombination | Â | Â |
T473.5 | Â | Â | Yes | HHH202, J1J2, EV120, IVS38 | NF1 | MLPA | Mitotic recombination | Â | Â |
T473.7 | Â | Â | Yes | J1J2, EV120 | NF1 | MLPA | Mitotic recombination | Â | Â |
T473.8 | Â | Â | Yes | HHH202, J1J2, EV120, IVS38, 3'NF1, EW207, D17S949, D17S1822 | NF1 and 3' flanking region | MLPA | Mitotic recombination | Â | Â |
T473.10 | Â | Â | Yes | J1J2, EV120, IVS38 | NF1 | MLPA | Mitotic recombination | Â | Â |
T473.14 | Â | Â | Yes | J1J2, EV120, IVS38, 3'NF1, EW207, D17S949, D17S1822 | NF1 and 3' flanking region | MLPA | Mitotic recombination | Â | Â |
T473.15 | Â | Â | Yes | J1J2, EV120, IVS38, 3'NF1 | NF1 | MLPA | Mitotic recombination | Â | Â |
T473.16 | Â | Â | Yes | J1J2, EV120, IVS38, 3'NF1, EW207, D17S949, D17S1822 | NF1 and 3' flanking region | MLPA | Mitotic recombination | Â | Â |
T473.21 | Â | Â | Yes | J1J2, EV120 | NF1 | MLPA | Mitotic recombination | Â | Â |
T473.35 | Â | Â | Yes | EV120, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
T473.30 | Â | Â | Yes | J1J2, EV120, IVS38, 3'NF1, EW207, D17S949 | NF1 and 3' flanking region | MLPA | Mitotic recombination | Â | Â |
T473.32 | Â | Â | Yes | J1J2, EV120 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
T473.34 | Â | Â | Yes | EV120, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
T225.1 | Ex10b deletion [MLPA] | Single exon deletion | Â | LOH | Â | NIA | Â | Â | Unpublished data, Cardiff |
T225.3 | Â | Â | Â | LOH | Â | Â | Â | Â | Â |
T68.2 | Deletion exons 10b-19b | Partial gene deletion | Yes | UT172 - I38 206,207 | Exon 5-3' region | NIA | Â | Â | Unpublished data, Cardiff |
T68.3 | Â | Â | Yes | UT172 - I38 206,207 | Exon 5-3' region | Â | Â | Â | Â |
CLJ1N | Ex13: c.2041C > T; p.Arg681X | Nonsense | Yes | NF1, D17S1800 | NF1 and 3' flanking region | NIA | Â | 32/126 | 5, 6, 7 |
CLJ2N | Â | Â | Yes | D17S33, D17S1294, NF1, D17S1800, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | Â | Â | Â | Â |
T170.3 | Ex13: c.2041C > T; p.Arg681X | Nonsense | Â | LOH | Â | NIA | Â | Â | Unpublished data, Cardiff |
T170.2 | Â | Â | Â | LOH | Â | Â | Â | Â | Â |
ABA1N | Ex13: c.2251 + 2T > C | Splice site | Yes | DS17S1824, D17S841, D17S1294, D17S1863, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802, D17S784, D17S928 | Majority of 17q | NIA | Â | 32/126 | 5, 6, 7 |
ABA2N | Â | Â | Yes | DS17S1824, D17S841, D17S1294, D17S1863, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802, D17S784, D17S928 | Majority of 17q | Â | Â | Â | 5, 6, 7 |
T436 | Ex17: c.2875C > T; p.Glu959X | Nonsense | Yes | IVS27, EV120, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | 22/89 | 4 |
T439 | Â | Â | Yes | IVS27, EV120, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
T440 | Â | Â | Yes | IVS27, EV120, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
T444 | Â | Â | Yes | HHH202, J1J2, IVS27, EV120, IVS38, 3'NF1 | NF1 and flanking regions | MLPA | Mitotic recombination | Â | Â |
T446 | Â | Â | Yes | IVS27, EV120, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
T448 | Â | Â | Yes | HHH202, J1J2, IVS27, EV120, IVS38, 3'NF1 | NF1 and flanking regions | MLPA | Mitotic recombination | Â | Â |
T454 | Â | Â | Yes | IVS27, EV120, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
EAD1N | Ex20: c.3419C > G; p.Ser1140X | Nonsense | Yes | NS | Â | NIA | Â | 32/126 | 5, 6, 7 |
EAD2N | Â | Â | Â | Â | Â | Â | Â | Â | Â |
CSG3N | Ex21: c.3525_3526delAA; p.Arg1176GlufsX17 | 2 bp deletion (FS) | Yes | D17S1824, D17S1294, NF1, D17S1800, D17S1880, D17S798 | NF1 and flanking regions | NIA | Â | 32/126 | 5, 6, 7 |
CSG38N | Â | Â | Yes | NF1 | NF1 | Â | Â | Â | Â |
CSN1N | Â | Â | Yes | D17S1294, NF1, D17S1880, D17S798, D17S250, D17S787, D17S784, D17S928 | Majority of 17q | Â | Â | Â | Â |
CSG1N | Â | Â | Yes | D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | Â | Â | Â | Â |
CSG2N | Â | Â | Yes | DS17S1824, D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | Â | Â | Â | Â |
CSG4N | Â | Â | Yes | DS17S1824, D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | Â | Â | Â | Â |
CSG5N | Â | Â | Yes | DS17S1824, D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | Â | Â | Â | Â |
CSG21N | Â | Â | Yes | DS17S1824, D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | Â | Â | Â | Â |
CSG25N | Â | Â | Yes | D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | Â | Â | Â | Â |
CSG42N | Â | Â | Yes | D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | Â | Â | Â | Â |
CSG51N | Â | Â | Yes | DS17S1824, D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | FISH | Mitotic recombination | Â | Â |
CSG52N | Â | Â | Yes | D17S33, DS17S1824, D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787, D17S802 | Majority of 17q | NIA | Â | Â | Â |
CSG62N | Â | Â | Yes | NS | Â | Â | Â | Â | Â |
T177 | Ex23.1: c.3916 C > T; p.Arg1306X | Nonsense | Â | LOH | Â | NIA | Â | Â | Unpublished data, Cardiff |
T213 | Â | Â | Â | LOH | Â | Â | Â | Â | Â |
NF44 UHG_1 | Ex27a: c.4515-2A > T | Splice site | Yes | NF1 germline mutation, rs9891455 | NF1 | Array CGH | Deletion | 6/28 | 2 |
NF44 UHG_41 | Â | Â | Yes | rs1018190 | NF1 | Array CGH | Deletion | Â | Â |
T106.1 | Ex37: c.6791dupA; p.Tyr2264X | 1 bp insertion (FS) | Yes | IVS38, 3'NF1-1 | Â | NIA | Â | Â | Unpublished data, Cardiff |
T106.5 | Â | Â | Yes | I41 - C3 | 3' UTR | Â | Â | Â | Â |
T106.6 | Â | Â | Yes | J1J2, EVI20, I38, I41, C3C7, 206, 207 | Â | Â | Â | Â | Â |
T210.2 | Ex42: c.7458delC; p.Tyr2487IlefsX5 | 1 bp deletion (FS) | Â | Â | Â | 30% WG | Â | Â | Unpublished data, Cardiff |
T210.4 | Â | Â | Â | Â | Â | 30% WG | Â | Â | Â |
T210.8 | Â | Â | Â | Â | Â | 30% WG | Â | Â | Â |
T210.4 | Â | Â | Â | Â | Â | E8: 30% WG | Â | Â | Â |
T210.5 | Â | Â | Â | Â | Â | E8: exon duplication | Â | Â | Â |
HT1335 | Ex4c: c.7237C > T; p.Gln2413X | Nonsense | Â | Â | Â | E16: del | Â | Â | Unpublished data, Cardiff |
T128.30 | Ex6: c.784C > T; p.Arg262Cys | Missense | Yes | Â | 3' UTR to 3' region | NIA | Â | Â | Unpublished data, Cardiff |
T192.4 | Deletion of exons 6-27a [MLPA] | Multi-exon deletion | Â | LOH: J1J2, EV120, HHH202, | Â | Â | Â | Â | Unpublished data, Cardiff |
p062 | Ex7: c.910C > T; p.Arg304X | Nonsense | Â | LOH (6 samples) | Â | Deletion (2 samples) | Â | Â | Unpublished data, Cardiff |
p082 | Ex7: c.910C > T; p.Arg304X | Nonsense | Â | LOH (5 samples) | Â | Deletion(5 samples) | Â | Â | Â |
ACF1N | Ex7: c.910C > T; p.Arg304X | Nonsense | Yes | D17S841, D17S1294, D17S1863, NF1, D17S1880, D17S798, D17S250, D17S802, D17S784 | Majority of 17q | FISH | Mitotic recombination | 32/126 | 5, 6, 7 |
MIGS1N | Ex7: c.910C > T; p.Arg304X | Nonsense | Yes | D171863, NF1, D17S1800, D17S1880 | NF1 and flanking regions | NIA | Â | 32/126 | Â |
CAG1N | Ex7: c.979delCinsTT; p.Leu327PhefsX3 | Indel (FS) | Yes | NF1 | Intragenic NF1 | NIA | Â | 32/126 | Â |
CAG3N | Ex7: c.979delCinsTT; p.Leu327PhefsX3 | Indel (FS) | Yes | NS | Â | NIA | Â | 32/126 | Â |
T199 | Ex7: c.983_984delGT; p.Cys324X | 2 bp deletion (FS) | Yes | IVS12, J1J2 | Â | NIA | Â | Â | Unpublished data, Cardiff |
NF56-2 | Ex9: c.1246C > T; p.Arg416X | Missense | Yes | Pin 1, RsaI, AluI, Pin 28, 530, NF1 3'UTR, Mfd 15 | NF1 and flanking regions | NIA | Â | 1/6 | 8 |
T197A | Ex10a: c.1318C > T p.Arg440X | Nonsense | Â | LOH? | Â | Â | Â | Â | Unpublished data, Cardiff |
CLT1N | Ex12a: c.1754_1757delTAAC; p.Thr586SerfsX19 | 4 bp deletion (FS) | Yes | D17S841, D17S1863, NF1, D17S1800, D17S1880, D17S787, D17S802 | Majority of 17q | Â | Â | 32/126 | Â |
p022 | Ex12a: c.1756_1759delACTA; p.Thr586ValfsX18 | 4 bp deletion (FS) | Â | LOH (9 samples) | Â | Deletion (2 samples) | Â | Â | Unpublished data, Cardiff |
p020 | Ex13: c.2041C > T; p.Arg681X | Nonsense | Â | LOH (2 samples) | Â | Deletion (0 samples) | Â | Â | Â |
T141.5 | Ex13: c.2233delA; p.Ser745AlafsX2 | 1 bp deletion (FS) | Yes | 202, 12b, IVS27, IVS38, 3'NF1 | Â | Â | Â | Â | Unpublished data, Cardiff |
p103 | Ex15: c.2338A > C; p.Thr780Pro | Missense | Â | LOH (10 samples) | Â | Deletion(3 samples) | Â | Â | Unpublished data, Cardiff |
T22 | Ex17: c.2851-2A > G | Splice site | Yes | Â | 3'UTR to 3' flanking regions | Â | Â | Â | Unpublished data, Cardiff |
NF253-UHG E | Ex17: c.2851-2A > G | Splice site | Yes | Not specific | Â | NIA | Â | 3/38 | 3 |
L005 A | Ex18: c.3113 + 1G > A | Splice site | Â | Â | Â | Â | Â | Â | Â |
319T1 | Ex19b: c.3208C > T; p.Gln1070X | Nonsense | Yes | NF-exon5 | Intragenic NF1 | Â | Â | 2/15 | 9 |
p023 | Ex21: c.3525_3526delAA; p.Arg1176SerfsX18 | 2 bp deletion (FS) | Â | LOH (14 samples) | Â | Deletion (5 samples) | Â | Â | Unpublished data, Cardiff |
p011 | Ex22: c.3826C > T; p.Arg1276X | Nonsense | Â | LOH (5 samples) | Â | Deletion (1 sample) | Â | Â | Â |
MASG2N | Ex22: c.3870 + 1G > T | Splice site | Yes | NF1, D17S1880, D17S798, D17S250, D17S787 | Majority of 17q | FISH | Mitotic recombination | 32/126 | 5, 6, 7 |
T171 | Ex23.2: c.4084 C > T; p.Arg1362X | Nonsense | Â | LOH | Â | Â | Â | Â | Unpublished data, Cardiff |
p104 | Ex25: c.4309G > T; p.Glu1436X | Nonsense | Â | LOH (3 samples) | Â | Deletion (0 samples) | Â | Â | Unpublished data, Cardiff |
p078 | Ex27a: c.4537C > T; p.Arg1513X | Nonsense | Â | LOH (6 samples) | Â | Deletion (0 samples) | Â | Â | Â |
p084 | Ex27a: c.4572C > G; p.Tyr1524X | Nonsense | Â | LOH (2 samples) | Â | Deletion (0 samples) | Â | Â | Â |
p102 | Ex29: c.5242C > T; p.Arg1748X | Nonsense | Â | LOH (5 samples) | Â | Deletion (2 samples) | Â | Â | Â |
p055 | Ex30: c.5710 G > T; p.Glu1904X | Nonsense | Â | LOH (1 sample) | Â | Deletion (0 samples) | Â | Â | Â |
EMN1N | Ex30: c.5749 + 332A > G | Splice site | Yes | NF1, D17S1800 | NF1 and 3' flanking region | Â | Â | 32/126 | 5, 6, 7 |
p027 | Ex33: c.6226delG; p.Ala2076GlnfsX13 | 1 bp deletion (FS) | Â | LOH (1 sample) | Â | Deletion (0 samples) | Â | Â | Unpublished data, Cardiff |
p052 | Ex37: c.6791_6792dupA; p.Tyr2264X | 1 bp duplication (FS) | Â | LOH (1 sample) | Â | Deletion (1 sample) | Â | Â | Â |
T23.6 | Ex41: c.7268_7269delCA; p.Thr2423SerfsX2 | 2 bp deletion (FS) | Yes | EVI20, I38, I41, C3 | Â | NIA | Â | Â | Unpublished data, Cardiff |
T100 | Ex41: c.7267dupA; p.Thr2426X | 1 bp duplication (FS) | Yes | Â | I38 to 3'UTR | Â | Â | Â | Unpublished data, Cardiff |
T164.1 | Ex41: c.7285 C > T; p.Arg2429X | Nonsense | Â | LOH | Â | Â | Â | Â | Unpublished data, Cardiff |
MAR2N | NI | NI | Yes | NF1, D17S1800 | NF1 and 3' flanking region | NIA | Â | 32/126 | 5, 6, 7 |
MOPT2N | NI | NI | Yes | D17S1824, D17S1294, D171863, NF1, D17S1800, D17S1880 | NF1 and flanking regions | Â | Â | Â | Â |
NGL1N | NI | NI | Yes | D17S841, D17S1294, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S802, D17S784, D17S928 | Majority of 17q | Â | Â | Â | Â |
JRR2N | NI | NI | Yes | D17S1294, D17S1863, NF1, D17S1800, D17S1880, D17S798, D17S250, D17S787 | Majority of 17q | Â | Â | Â | Â |
SLC1N | NI | NI | Yes | D17S33, DS17S1824, D17S841, D17S1294, NF1, D17S1880, D17S798, D17S250, D17S784, D17S928 | Majority of 17q | Â | Â | Â | Â |
HT1377.1 | NI | NI | Yes | Â | Â | Â | Â | Â | Unpublished data, Cardiff |
HT1377.2 | NI | NI | Yes | Â | Â | NIA | Â | Â | Â |
T109.4 | NI | NI | Yes | I38, I41, 206 | 3' region | Â | Â | Â | Â |
T167.c | NI | NI | Yes | IVS27, IVS38, 3'NF1 | Â | Â | Â | Â | Â |
T192.1 | NI | NI | Yes | 202, IVS12, J1J2, IVS27 | Â | Â | Â | Â | Â |
T197 | NI | NI | Yes | J1J2 | Â | Â | Â | Â | Â |
T227.2 | NI | NI | Yes | IVS12, J1J2 | Â | Â | Â | Â | Â |
T230.2 | NI | NI | Yes | 202, IVS12, IVS27 | Â | Â | Â | Â | Â |
T232.2 | NI | NI | Yes | J1J2 | Â | Â | Â | Â | Â |
T241 | NI | NI | Yes | J1J2 | Â | Â | Â | Â | Â |
NF253_32 | NI | NI | Yes | rs1018190, rs9891455, rs8074061 | NF1 | Array CGH | Mitotic recombination | 6/28 | 2 |
T224.1 | NI | NI | Â | LOH | Â | NIA | Â | Â | Unpublished data, Cardiff |
T162 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T172 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T179.1 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T204.2 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T224.2 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T173.1 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T179.2 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T1281.2 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T1281.4 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T220 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T221 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T223 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T258.1 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
T258.2 | NI | NI | Â | LOH | Â | Â | Â | Â | Â |
SCs from cutaneous neurofibromas | Â | Â | Â | Â | Â | Â | Â | Â | |
T543.2 | Ex4a: c.373delGinsATGTGT; p.Arg125HisfsX4 | Indel (FS) | Yes | J1J2-3'NF1 | Â | Â | Â | Â | Unpublished data, Cardiff |
T536A | Ex40: c.7127_7258del132 [Exon 40 deletion?] | 132 bp deletion (FS) | Yes | J1J2-IVS38 | Â | NIA | Â | Â | Unpublished data, Cardiff |
T541.2 | Â | Â | Yes | EV120-3'NF1 | Â | Â | Â | Â | Â |
T541.4 | Â | Â | Yes | EV120-3'NF1 | Â | Â | Â | Â | Â |
T539 | 90 kb Deletion | Genomic deletion | Â | Â | Â | Duplication: Ex19b-25 | Â | Â | Unpublished data, Cardiff |
PNFs | Â | Â | Â | Â | Â | Â | Â | Â | Â |
37a | Ex24: c.4268A > G; p.Lys1423Arg | Missense | Yes | HHH202, E5, I12b, EVI20,3'NF1-1 Complete gene deletion (1.4 Mb) | NF1 (1.4 Mb) | MLPA | Genomic deletion | 20/29 | 10 |
37b | Â | Â | Yes | IVS27, EVI20, IVS38, 3'NF1-1 Probable gene deletion | NF1 and 3' flanking region | MLPA | Genomic deletion | 20/29 | 10 |
T210.2 PNF | Ex42: c.7458delC; p.Tyr2486IlefsX15 | 1 bp deletion (FS) | Yes | LOH detected in only 30% of cells | Â | Â | 30% whole gene deletion | Â | Unpublished data, Cardiff |
T261 PNF | Ex3: c.288 + 1 delG | 1 bp deletion at a splice site | LOH IVS38 | Â | Â | Â | Â | Â | Â |
605-1 | Ex4a: c.289-2A > G | Splice site | Yes | D17S975, IVS27TG24.8, IVS27TG28.4, D17S1166, D17S1880, D17S907, D17S1788, D17S1861, D17S1809, D17S668, D17S928 | NF1 and flanking regions | MLPA | Mitotic recombination | 13/43 | 11 |
47/T411 | Ex4a: c.440_441GC > AA; p.Cys147X | Nonsense | LOH IVS27, IVS38, 3'NF1-1 | IVS38, 3'NF1-1 | NF1 and 3' flanking region | NIA | Â | 20/29 | 10 |
8/T328 | Ex4b: c.480-2A > G | Splice site | LOH: IVS27, IVS38 | IVS27, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | 20/29 | 10 |
335-3 | Ex4b: c.528T > A; p.Asp176Glu | Missense | Yes | D17S2237, IVS27TG24.8, D17S1166, D17S1800 | NF1 | MLPA | Genomic deletion | 13/43 | 11 |
59 | Ex6: c.752dupA; p.Asp241GlufsX7 | Small Insertion (fs) | Yes | intron 38 marker 53.0 | Intragenic NF1 | NIA | Â | 1/38 | 12 |
T265.2 | Ex9: c.1186-13delT (Pathogenicity?) | 1 bp deletion within a splice site | LOH ivs27, ivs38 | Â | Â | Â | Â | Â | Â |
374-4 | Ex10a: c.1318C > T; p.Arg440X | Nonsense | Yes | IVS27TG24.8, IVS27TG28.4, D17S1166, D17S1880, D17S907, D17S1861 | NF1 and 3' flanking region | MLPA | Mitotic recombination | 13/43 | 11 |
14a/ T412 | Ex13: c.2076C > G; p.Tyr692X | Nonsense | I12B, 3' NF1 | I12B, 3' NF1-1 | NF1 and 3' flanking region | MLPA | Mitotic recombination | 20/29 | 10 |
T263 | Ex15: c.2326-2A > T | Splice site | LOH ivs27 [rest hom] | Â | Â | Â | Â | Â | Â |
22/T394 | Ex16: c.2446C > T; p.Arg816X | Nonsense | IVS27 | IVS 27, EVI20 | Intragenic NF1 | MLPA | Mitotic recombination | 20/29 | 10 |
T437.2 | Ex16: c.2497delT; p.Ser833ProfsX7 | 1 bp deletion (FS) | 1-6ex 1,2,3,4a,4b,4c, 6 deletion | Â | Â | NIA | Â | Â | Â |
T212 | Ex16: c.2705deT; p.Met902ArgfsX22 | 1 bp deletion (FS) | Â | Â | Â | Â | Ex1-Ex 41 deletion [variable ?] | Â | Â |
18/T298 | Ex18: c.3113 + 1G > A | Splice site | LOH :HHH202, IVS 27 | IVS 27 | Intragenic NF1 | MLPA | Inconclusive | 20/29 | 10 |
30/T342 | Ex19a: c.3123G > T; p.Met1041Ile | Missense | Yes | Determined by MLPA | NF1 (1.4 Mb) | MLPA | Genomic deletion | 20/29 | 10 |
5 | Ex20: c.345&_3460delCTCA; p.Leu1153MetfsX3 | 4 bp deletion (FS) | Yes | NF1 gene | NF1 | Â | Â | 1/3 | 13 |
23/ T373.2 | Ex22: c.3826C > T; p.Arg1276X | Nonsense | WG deletion [mixed cell population] | IVS 27, IVS38 | Intragenic NF1 | MLPA | Inconclusive | 20/29 | 10 |
452T | Ex23.2: c.4084C > T; p.Arg1362X | Nonsense | Yes | NF-exon5 RFLP, NF- (GATN)n intron 26, NF- Alu(AAAT)n(i27b), NF- EVI2B RFLP(i27b), NF- EVI2A RFLP(i27b), NF- IVSAC28.4(i27b), NF- Evi-20, NF- IVS38TG53.0, NF intron 41 RFLP, D17S57 (EW206), D17S250, D17S1301, D17S384 | NF1 and 3' flanking region | NIA | Â | 4/10 | 9 |
27/T301 | Ex23.2: c.4095C > A; p.Cys1365X | Nonsense | Yes | Determined by MLPA | Intragenic NF1 | MLPA | Genomic deletion | 20/29 | 10 |
T330 | Ex24: c.4267A > G; p.Lys1423Glu | Missense | IVS27 | Â | Â | NIA | Â | Â | Â |
6/T362/ T395 | Ex24: c.4268A > G; p.Lys1423Arg | Missense | Yes | EW206, EW207 | Intragenic NF1 | MLPA | Inconclusive | 20/29 | Â |
T362 PNF | Ex24: c.4268A > G; p.Lys1423Arg | Missense | LOH: HHH202, E5, I12b, EVI20, 3'NF | Â | Â | NIA | Â | Â | Â |
T395 PNF | Ex24: c.4268A > G; p.Lys1423Arg | Missense | LOH:IVS27, EVI20, IVS38, 3'NF1-1 | Â | Â | Â | Â | Â | Â |
317-1 | Ex25: c.4270-2A > G | Splice site | Yes | IVS27TG24.8, IVS27TG28.4, D17S1166 | NF1 | MLPA | Genomic deletion | 13/43 | 11 |
T393 | Ex27a: c.4537C > T; p.Arg1513X | Nonsense | Â | Â | Â | Â | Whole gene deletion | Â | Â |
26/T300 | Ex29: c.5227_5229delGTAinsT; p.Val1743TyrfsX17 | Indel (FS) | Yes | Determined by MLPA | NF1 (1.4 Mb) | MLPA | Genomic deletion | 20/29 | 10 |
338-2 | Ex29: c.5290delG; p.Ala1764LeufsX8 | 1 bp deletion (FS) | Yes | D17S783, D17S975, IVS27TG28.4, D17S1166, D17S1880 | NF1 and flanking regions | MLPA | Genomic deletion | 13/43 | 11 |
952-8 | Ex30: c.5749 + 4delA | Splice site | Yes | D17S975, D17S1880, D17S907, D17S1788, D17S1861, D17S1809, D17S668, D17S928 | NF1 and flanking regions | MLPA | Genomic deletion | Â | Â |
34/T392 | Ex31: c.5750_5754dupGTATT; p.Glu1919ValfsX4 | 5 bp duplication (FS) | Yes | EVI20, IVS38, 3'NF1-1, | NF1 and 3' flanking region | NIA | Â | 20/29 | 10 |
21/T357 | Ex37: c.6791dupA; p.Tyr2264X | 1 bp duplication (FS) | LOH: EW206 | EW206 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
T375 | Ex40: c.7237C > T; p.Gln2413X | Nonsense | 16Ex 16 deletion, ex13 & 18 also lower | Â | Â | NIA | Â | Â | Â |
7 | Ex41: c.7285C > T; p.Arg2429X | Nonsense | Yes | HHH202, IVS27 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
15/T407 | Ex46: c.7926dupT; p.Lys2643X | 1 bp duplication (FS) | LOH 3'NF1-1, EW206 | 3'NF1-1 | NF1 and 3' flanking region | MLPA | Inconclusive | Â | Â |
c1 UK/ T56 | Ex46: c.8035A > T; p.Thr2679Ser | Missense | LOH IVS27 | IVS27 | Intragenic NF1 | NIA | Â | Â | Â |
T408 | Segmental NF1 NI | NI | LOH: IVS27, IVS38, 3'NF1-1 | Â | Â | Â | Â | Â | Â |
T377 | Segmental NF1 NI | NI | WG deletion | Â | Â | Â | Â | Â | Â |
39 | Segmental NF1 NI | NI | Yes | Determined by MLPA | NF1 (1.1 Mb) | MLPA | Genomic deletion | Â | Â |
43 | Segmental NF1 NI | NI | Yes | IVS27, IVS38, 3'NF1-1 | NF1 and 3' flanking region | MLPA | Mitotic recombination | Â | Â |
T385.1 | NI | NI | Yes | Â | Â | NIA | Â | Â | Unpublished data, Cardiff |
T385.2 | NI | NI | LOH/del | Â | Â | Â | Â | Â | Â |
T316 | NI | NI | Yes | LOH: HHH202, E5, I12b, EVI20,3'NF, C71/2, EW206 | Â | Â | Â | Â | Â |
76, 45-95 | NI | NI | Yes | IVS27AC28.4, IVS27TG24.8, IVS38GT53 | Intragenic NF1 | NIA | Â | 8/14 | 14 |
x1, 47-95 | NI | NI | Yes | IVS27AC28.4, M98509, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
x1, 27-97 | NI | NI | Yes | IVS27AC28.4, M98509, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
293, 71-97 | NI | NI | Yes | M98509, IVS27TG24.8, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
293, 124-98 | NI | NI | Yes | M98509, IVS27TG24.8, IVS38GT54 | Intragenic NF1 | Â | Â | Â | Â |
290, 83-97 | NI | NI | Yes | IVS27AC28.4, IVS27TG24.8, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
290, 121-98 | NI | NI | Yes | IVS27AC28.4, IVS27TG24.8, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
292, 122-98 | NI | NI | Yes | IVS27TG24.8, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
PD-T1 | NI | NI | Yes | NF-Alu(AAAT)n(i27b), D17S1800 | Intragenic NF1 | NIA | Â | 4/10 | 9 |
386T | NI | NI | Â | NF-Alu(AAAT) n(i27b), NF- IVSAC28.4(i27b), NF-Evi-20, NF- IVS38TG53.0, D17S1800 | NF1 | Â | Â | Â | Â |
454T-V | NI | NI | Yes | NF-Alu(AAAT)n(i27b), NF-EVI2B RFLP(i27b), NF-IVSAC28.4(i27b), NF-Evi-20, NF intron 41 RFLP, D17S57 (EW206), D17S1301 | NF1 | Â | Â | Â | Â |
NF284-1 | NI | NI | Yes | Exon 28 14bp duplication marker (specific to germline lesion found) | Intragenic NF1 | Â | Â | 1/1 | 8 |
2654-97 | NI | NI | Yes | Determined by FISH | Whole chromosome | FISH | Genomic deletion | 1/11 | 15 |
385 | NI | NI | Yes | D17S975, D17S1880, D17S907, D17S1788, D17S1861, D17S1809, D17S668, D17S928 | NF1 and flanking regions | MLPA | Mitotic recombination | 13/43 | 11 |
389-2 | NI | NI | Yes | D17S975, D17S1307, D17S2237, IVS27TG28.4, D17S1800, D17S1880, D17S907, D17S1861, D17S1809, D17S668, D17S928 | NF1 and flanking regions | MLPA | Mitotic recombination | Â | Â |
604-4 | NI | NI | Yes | D17S1800, D17S1880, D17S907, D17S1861, D17S928 | NF1 and flanking regions | MLPA | Mitotic recombination | Â | Â |
913-5 | NI | NI | Yes | D17S2237, IVS27TG24.8, D17S1880, D17S1788, D17S1861 | NF1 and 3' flanking region | MLPA | Genomic deletion | Â | Â |
612-1 | NI | NI | Yes | D17S1307, D17S2237, IVS27TG24.8, D17S1166, D17S1800, D17S1880 | NF1 and flanking regions | MLPA | Genomic deletion | Â | Â |
337-5 | NI | NI | Yes | D17S1307, D17S2237, IVS27TG24.8, D17S1166, D17S1800 | NF1 | MLPA | Genomic deletion | Â | Â |
390 | NI | NI | Yes | IVS27TG24.8, IVS27TG28.4, D17S1166, D17S1800 | NF1 | MLPA | Genomic deletion | Â | Â |
49 | NI | NI | Yes | HHH202, E5, I12b, EVI20, 3'NF1-1, C71/2, EW206 | NF1 | MLPA | Inconclusive | 20/29 | 10 |
Spinal neurofibromas | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1 | Ex7: c.899T > C; p.Leu300Pro | Missense | Yes | EVI20, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | 8/22 | 16 |
7 | Ex9: c.1186-13delT (Pathogenicity?) | 1 bp deletion (FS) | Yes | IVS27, IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
3 | Ex16: c.2410-2A > T | Splice site | Yes | IVS27 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
11.1 | Ex22: c.3827G > A; p.Arg1276Glu | Missense | Yes | IVS38 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
11.2 | Â | Â | Yes | Deletion of exons 13 > 16 | Intragenic NF1 | MLPA | Deletion | Â | Â |
2 | Ex23.2: c.4066G > A; p.Glu1356Lys | Missense | Yes | 27, 3'NF1 | NF1 | MLPA | Mitotic recombination | Â | Â |
10 | Ex29: c.5242C > T; p.Arg1748X | Nonsense | Yes | I12B, Alu1, J1J2 and EVI20 | Intragenic NF1 | MLPA | Mitotic recombination | Â | Â |
MPNSTs | Â | Â | Â | Â | Â | Â | Â | Â | Â |
T196.20 | Deletion exons 2 and 3 | Two exon deletion | Yes | I12b, IVS27AC28.4, EVI20(IVS27B), IVS38GT53.0 (IVS38), 3'-NF1, C7/CT1/2 (3'-UTR), EW206 (3extragenic), EW207 (3'extragenic), D17S798 | NF1 and 3' flanking region | MLPA | Mitotic recombination | 2/11 | 1 |
T196.24 | Â | Â | Yes | NF1 exon 5, I12b, IVS27AC28.4, EVI20(IVS27B), IVS38GT53.0 (IVS38), 3'-NF1, C7/CT1/2 (3'-UTR), EW206 (3'extragenic), EW207 (3'extragenic) | NF1 and 3' flanking region | MLPA | Genomic deletion | 2/11 | 1 |
13 | Deletion exons 2 and 3 | Two exon deletion | Yes | Ex5, I12b, IVS27, EVI20, IVS38,C7CT, EW206, EW207,3'NF1 | NF1 and 3' flanking region | MLPA/CGH array | Genomic deletion | 31/34 | 17 |
7 | Ex4c: c.654 + 1G > T | Splice site | Yes | UT172, HH202, J1/J2, EVI20 | NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
27 | Ex8: c.1133_1136delACTG; p.Asp378AlafsX7 | 4 bp deletion (FS) | Yes | Ex5, J1J2,3'NF1 | NF1 and 3' flanking region | NIA | Â | Â | Â |
9 | Ex11: c.1713G > A; p.Trp571X | Nonsense | Yes | D17S182, I12b, J1/J2 | Intragenic NF1 | Â | Â | Â | Â |
10 | Â | Â | Yes | UT172, HH202, J1/J2, EVI20, > 2.2Mb | NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
23 | Ex12a: c.1318C > T; p.Arg440X | Nonsense | Yes | HHH202, EVI20. IVS38 | Intragenic NF1 | NIA | Â | Â | Â |
14 | Ex12a: c.1754_1757delTAAC; p.Thr586ValfsX19 | 4 bp deletion (FS) | Yes | IVS27, 3'NF1 | NF1 and 3' flanking region | MLPA/CGH array | Mitotic recombination | Â | Â |
12 | Ex13: c.2002-14C > G | Splice site | Yes | I12b, IVS27, EVI20, IVS38, 3'NF | NF1 and 3' flanking region | MLPA/CGH array | Genomic deletion | Â | Â |
43 | Ex13: c.2041C > T; p.Arg681X | Nonsense | Yes | Determined by MLPA | NF1 | MLPA | Duplication mitotic recombination | 6/25 | 18 |
15 | Ex16: c.2497delT; p.Ser833ProfsX7 | 1 bp deletion (FS) | Â | Intragenic Deletion (Exons 1-6) MLPA | Intragenic NF1 | MLPA/CGH array | Genomic deletion | 31/34 | 17 |
25 | Ex16: c.2705delT; p.Met902ArgfsX22 | 1 bp deletion (FS) | Yes | Intragenic deletion (exons1-41) MLPA | Intragenic NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
17 | Ex20: c.3457_3460delCTCA; p.Leu1153MetfsX3 | 4 bp deletion (FS) | Â | Â | Â | NIA | Â | Â | Â |
18 | Â | Â | Yes | 3'NF1 | Intragenic NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
459T1 | Ex21: c.3684delC; p.Asn1229MetfsX11 | 1 bp deletion (FS) | Yes | TP53(INTRON1), TP53(INTRON6), NF- (GATN)n INTRON26, NF-IVSAC28.4(i27b), D17S57, D17S250, D17S1301, D17S784 | Whole chromosome | NIA | Â | 3/5 | 9 |
8 | Ex22: c.3732delT; p.Thr1245Leufsx21 | 1 bp deletion (FS) | Yes | Int12, J1J2 | Intragenic NF1 | Â | Â | 31/34 | 17 |
64 | Ex23.1: c.3368 + 1delG | 1 bp deletion at a splice site | Yes | Determined by MLPA | NF1 | MLPA | Genomic deletion | 6/25 | 18 |
56 | Ex25: c.4276C > A; p.Gln1426Lys | Missense | Yes | Determined by MLPA | NF1 | MLPA | Duplication mitotic recombination | Â | Â |
4 | Ex27a: c.4537C > T; p.Arg1513X | Nonsense | Yes | IVS27b | Intragenic NF1 | MLPA/CGH array | Genomic deletion | 31/34 | 17 |
6 | Ex28: c.5003insTG; p.Tyr1668LeufsX7 | 2 bp insertion (FS) | Yes | I4b, J1J2, EVI20 | NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
21 | Ex29: c.5234C > G; p.Ser1745X | Nonsense | Yes | Partial gene deletion | Intragenic NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
19 | Ex37: c.6792C > A; p.Tyr2264X | Nonsense | Yes | I12b, IVS27, J1J2, EVI20, IVS38, C7CT | NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
24 | Ex38: c.6961insC; p.Leu2321ProfsX5 | 1 bp duplication (FS) | Yes | Determined by MLPA | NF1 | MLPA | Genomic deletion | 6/25 | 18 |
1 | Ex41: c.7268_7269delCA; p.Thr2423SerfsX2 | 2 bp deletion (FS) | Yes | Intron 41-30 | Intragenic NF1 | MLPA/CGH array | Genomic deletion | 31/34 | 17 |
58 | NI | NI | Yes | HHH202, NF1, EW206 | Intragenic NF1 | Â | Genomic deletion | 6/11 | 19 |
52 | NI | NI | Yes | HHH202, NF1, EW206, EW207 | Intragenic NF1 | Â | Genomic deletion | Â | Â |
22 | NI | NI | Yes | HHH202 | Intragenic NF1 | Â | Genomic deletion | Â | Â |
8 | NI | NI | Yes | EW206, EW207 | Intragenic NF1 | Â | Genomic deletion | Â | Â |
2 | NI | NI | Yes | p144D6, pYNZ22.1, pYNH37.3, EW503 | NF1 region and some 17p | Â | Genomic deletion | 5/6 | 20 |
3 | NI | NI | Yes | EW503, EW301 (B), EW301 (T) | Intragenic NF1 | Â | Genomic deletion | Â | Â |
4 | NI | NI | Yes | p144D6, pYNZ22.1, pYNH37.3, EW503, EW301 (T), pHHH202, EW207 (B), pTHH59 | Whole chromosome | Â | Genomic deletion | Â | Â |
5 | NI | NI | Yes | p144D6, pYNZ22.1, pYNH37.3, EW503, EW301 (B), EW301 (T), pHHH202, EW207 (B) | Whole chromosome | Â | Genomic deletion | Â | Â |
10 | NI | NI | Yes | p144D6, pYNZ22.1, | NF1 region and some 17p | Â | Genomic deletion | Â | Â |
88-3/14 | NI | NI | Yes | D17S30, TP53, D17S71, D17S8, D17S57 | Whole chromosome | G-banded chromosome 17 duplication | Genomic duplication | 3/9 | 21 |
88-8 | NI | NI | Yes | D17S30, D17S71 | NF1 | NIA | Â | Â | Â |
88-18 | NI | NI | Yes | D17S30, D17S71, D17S21, D17S33, EVI2B, D17S82 | Whole chromosome | Â | Â | Â | Â |
1 | NI | NI | Yes | DI7S5, DI7SI, DI7SI37, CRYBI, NF1, DI7S146 | NF1 and flanking regions | NIA | Â | 2/5 | 22 |
4 | NI | NI | Yes | DI7S34, DI7S5, DI7S146 | NF1 and flanking regions | Â | Â | Â | Â |
1 | NI | NI | Yes | Â | NF1 | Â | Genomic deletion | 1/1 | 23 |
1 | NI | NI | Yes | NF1 alu, TP53 BHP53 | Whole chromosome | NIA | Â | 3/7 | 24 |
7 | NI | NI | Yes | CRYB1, NF1 alu, TP53 BHP53 | Whole chromosome | Â | Â | Â | Â |
8 | NI | NI | Yes | D17S4, D17S74, NF1 e.31, NF1 alu | NF1 | Â | Â | Â | Â |
441T | NI | NI | Yes | TP53(INTRON6), D17S1863, D17twbch = S33, NF- IVSAC28.4(i27b), NF-Evi-20, NF-IVS38TG53.0, D17S1800, D17S73, D17S1301 | Whole chromosome | NIA | Â | 3/5 | 9 |
396T4 | NI | NI | Yes | NF-IVSAC28.4(i27b, NF-IVS38TG53.0, D17S57, D17S250, D17S1301 | NF1 and 3' flanking region | Â | Â | Â | Â |
2 | NI | NI | Yes | NF1, P16, TP53 | Whole chromosome | NIA | Â | 5/8 | 13 |
5a | NI | NI | Yes | NF1, P16, TP53 | Whole chromosome | Â | Â | Â | Â |
5b | NI | NI | Yes | NF1, P16, TP53 | Whole chromosome | Â | Â | Â | Â |
6a | NI | NI | Yes | NF1, P16, TP53 | Whole chromosome | Â | Â | Â | Â |
6b | NI | NI | Yes | NF1, P16, TP53 | Whole chromosome | Â | Â | Â | Â |
2 | NI | NI | Yes | Total gene deletion | NF1 | MLPA/CGH array | Genomic deletion | 31/34 | 17 |
5 | NI | NI | Yes | Total gene deletion | NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
24 | NI | NI | Yes | EVI20, IVS27, IVS38 | Intragenic NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
26 | NI | NI | Yes | NF1 gene deletion | NF1 | MLPA/CGH array | Genomic deletion | Â | Â |
48 | NI | NI | Yes | Determined by MLPA | NF1 | MLPA | Genomic deletion | 6/25 | 18 |
86 | NI | NI | Yes | Determined by MLPA | NF1 | MLPA | Genomic deletion | Â | Â |
ACs | Â | Â | Â | Â | Â | Â | Â | Â | Â |
T65.1 | Ex24: c.4267A > G; p.Lys1423Glu | Missense | Yes | NS | NF1 3' flanking region | NIA | Â | 1/1 | 25 |
57 | NI | NI | Yes | EW206 | Intragenic NF1 | NIA | Â | 1/1 | 19 |
58 | NI | NI | Yes | D17S1849, D17S1863, D17S1880 | NF1 and 3' flanking region | NIA | Â | 2/4 | 26 |
76 | NI | NI | Yes | D17S1863, D17S1880 | NF1 and 3' flanking region | Â | Â | Â | Â |
182 | NI | NI | Yes | IVS27TG24.8 | Intragenic NF1 | NIA | Â | 11/12 | 27 |
185 | NI | NI | Yes | IVS27AC28.4, IVS38GT53, D17S804 | NF1 region and some 17p | Â | Â | Â | Â |
187 | NI | NI | Yes | IVS27AC28.4, IVS38GT53, D17S796 | NF1 region and some 17p | Â | Â | Â | Â |
309 | NI | NI | Yes | IVS38GT53, D17S796 | NF1 region and some 17p | Â | Â | Â | Â |
330 | NI | NI | Yes | IVS27AC28.4, IVS38GT53, D17S520, D17S796, D17S804 | NF1 region and some 17p | Â | Â | Â | Â |
502 | NI | NI | Yes | IVS27AC28.4, D17S520, D17S796 | NF1 region and some 17p | Â | Â | Â | Â |
519 | NI | NI | Yes | IVS27TG28.4, M98509, IVS27TG24.8, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
297 | NI | NI | Yes | IVS27TG28.4, M98509, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
609 | NI | NI | Yes | IVS27TG28.4, M98509 | Intragenic NF1 | Â | Â | Â | Â |
20954 | NI | NI | Yes | IVS27TG24.8, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
20962 | NI | NI | Yes | IVS27AC28.4, M98509, IVS38GT53 | Intragenic NF1 | Â | Â | Â | Â |
1 | NI | NI | Yes | Homozygous | Â | FISH | Unknown | 3/4 | 28 |
9 | NI | NI | Yes | Homozygous | Â | FISH | Genomic deletion | Â | Â |
10 | NI | NI | Yes | Homozygous | Â | FISH | Genomic deletion | Â | Â |
Gastric carcinoid tumours | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1 | Ex37: c.6841C > T; p.Gln2281X | Nonsense | Yes | IVS27TG24, D17S250 | Intragenic NF1 | NIA | Â | 1/1 | 29 |
GISTs | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1 | Ex27a: c.4537C > T; p.Arg1513X | Nonsense | Yes | D17S841, Alu, IVS27GT, IVS27CAGT, IVS38, 3'NF1-1, 3'NF1-2 | NF1 and 3' flanking region | MLPA | Mitotic recombination | 1/1 | 30 |
NF1-3 | Ex45: c.7807delG; p.Aal2603LeufsX3 | 1 bp deletion (FS) | Yes | Alu, IVS27AC33.1, IVS38GT53.0, IVS27TG24.8 | Intragenic NF1 | Array CGH | Genomic deletion | 1/7 | 3 |
JMML | Â | Â | Â | Â | Â | Â | Â | Â | Â |
D102 | Ex4b: c.574C > T; p.Arg192X | Nonsense | Yes | D17S925, D17S1800, D17S1880, D17S855, D17S1827, D17S787, D17S948, D17S784 | Majority of 17q | SNP array | Mitotic recombination- UPD | 4/5 | 31 |
D115 | Ex13: c.2066delT; p.Val689GlyfsX59 | 1 bp deletion (FS) | Yes | D17S925, D17S1800, D17S1880, D17S855, D17S1827, D17S787, D17S948, D17S784 | Majority of 17q | SNP array | Mitotic recombination- UPD | Â | Â |
D003 | Ex22: c.3861_3862delCT; p.Cys1288ValfsX21 | 2 bp deletion (FS) | Yes | D17S925, D17S1800, D17S1880, D17S855, D17S1827, D17S787, D17S948, D17S784 | Majority of 17q | SNP array | Mitotic recombination- UPD | Â | Â |
D126 | Ex44: c.7699C > T; p.Gln2567X | Nonsense | Yes | D17S925, D17S1800, D17S1880, D17S855, D17S1827, D17S787, D17S948, D17S784 | Majority of 17q | SNP array | Mitotic recombination- UPD | Â | Â |
1 | NI | NI | Yes | D17S1975, D17S1294, UT172, NF1, D17S1800, D17S250, D17S801, D17S939, D17S836, D17S1806, D17S1822, D17S1830 | Majority of 17q | FISH | Mitotic recombination- interstitial isodisomy (paternal) | 10/10 | 32 |
2 | NI | NI | Yes | D17S1975, D17S1294, UT172, NF1, D17S1800, D17S250, D17S801, D17S939, D17S836, D17S1806, D17S1822, D17S1830 | Majority of 17q | FISH | Mitotic recombination- interstitial isodisomy (paternal) | Â | Â |
3 | NI | NI | Yes | D17S1294, UT172, NF1, D17S1800, D17S250, D17S801, D17S939, D17S836, D17S1806, D17S1822, D17S1830 | Majority of 17q | FISH | Mitotic recombination interstitial isodisomy (paternal) | Â | Â |
4 | NI | NI | Yes | D17S1975, D17S1294, UT172, NF1, D17S1800, D17S250, D17S801, D17S939, D17S836, D17S1806, D17S1822, D17S1830 | Majority of 17q | FISH | Mitotic recombination- interstitial isodisomy (maternal) | Â | Â |
5 | NI | NI | Yes | D17S1975, D17S1294, UT172, NF1, D17S1800, D17S250, D17S801, D17S939, D17S836, D17S1806, D17S1822 | Majority of 17q | FISH | Mitotic recombination- interstitial isodisomy (maternal) | Â | Â |
6 | NI | NI | Yes | D17S1878, D17S33, D17S1975, D17S1294, UT172, NF1, D17S1800, D17S250, D17S801, D17S939, D17S836, D17S1806, D17S1822, D17S1830 | Majority of 17q | FISH | Mitotic recombination- interstitial isodisomy (maternal) | Â | Â |
7 | NI | NI | Yes | D17S1294, UT172, NF1, D17S1800, D17S250, D17S801, D17S939, D17S836, D17S1806, D17S1822, D17S1830, D17S928 | Majority of 17q | FISH | Mitotic recombination- interstitial isodisomy (maternal) | Â | Â |
8 | NI | NI | Yes | D17S1975, D17S1294, UT172, NF1, D17S1800, D17S250, D17S801, D17S939, D17S836, D17S1806, D17S1822, D17S1830, D17S928 | Majority of 17q | FISH | Mitotic recombination- interstitial isodisomy (paternal) | Â | Â |
9 | NI | NI | Yes | NF1, D17S1800 | Intragenic NF1 | FISH | Genomic deletion | Â | Â |
10 | NI | NI | Yes | NF1, D17S1800 | Intragenic NF1 | FISH | Genomic deletion | Â | Â |
D419 | NI | NI | Yes | D17S925, D17S1841, D17S1294, D17S1863, D17S1849, D17S1166, D17S1800, D17S1880, D17S1818, D17S855, D17S1827, D17S787, D17S948, D17S785, D17S784 | Majority of 17q | MLPA | Mitotic recombination- UPD | 5/10 | 33 |
D561 | NI | NI | Yes | D17S1294, D17S1863, D17S1849, D17S1166, D17S1800, D17S1880, D17S1818, D17S855, D17S1827, D17S787, D17S948, D17S785, D17S784 | Majority of 17q | MLPA | Mitotic recombination- UPD | Â | Â |
D378 | NI | NI | Yes | D17S1294, D17S1863, D17S1849, D17S1166, D17S1800, D17S1880, D17S1818, D17S855, D17S785 | Majority of 17q | Array CGH | Mitotic recombination- UPD | Â | Â |
D341 | NI | NI | Yes | D17S1849, D17S1166, D17S1800, D17S1880 | NF1 and flanking regions | Array CGH | Genomic deletion | Â | Â |
D566 | NI | NI | Yes | D17S1849, D17S1166, D17S1800, D17S784 | NF1 and flanking regions | Array CGH | Genomic deletion | Â | Â |
PCs | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1 | NI | NI | Yes | DI7S34, DI7S137, CRYBI, NF1, DI7S4 | Whole chromosome | NIA | Â | 7/7 | 22 |
2 | NI | NI | Yes | CRYBI, DI7S33, NF1, DI7S55, DI7S4 | NF1 | Â | Â | Â | Â |
3 | NI | NI | Yes | DI7S5, DI7S134, DI7S58, DI7S33 | Whole chromosome | Â | Â | Â | Â |
4 | NI | NI | Yes | DI7S33, NF1 | Intragenic NF1 | Â | Â | Â | Â |
5 | NI | NI | Yes | DI7S71, NF1, DI7S226 | Whole chromosome | Â | Â | Â | Â |
6L | NI | NI | Yes | DI7S5, NF1, DI7S145, DI7S226 | Whole chromosome | Â | Â | Â | Â |
6R | NI | NI | Yes | DI7S5, NF1, DI7S145, DI7S226 | Whole chromosome | Â | Â | Â | Â |
1 | NI | NI | Yes | TP53-BAM, TP53 AccII, NF1-AE25 (BgIII) SNP, THH59-TaqI, THH59-PvuII | Majority of 17 | NIA | Â | 2/7 | 34 |
1 | NI | NI | Yes | NF1-AE25 (BgIII) SNP, THH59-TaqI, THH59- PvuII-adrenal corticoid tumour | NF1 and 3' flanking region | Â | Â | Â | Â |
NS | NI | NI | Yes | Â | Â | Â | Â | 14/21 | 35 |
Glomus tumours | Â | Â | Â | Â | Â | Â | Â | Â | Â |
NF1-G2 | Ex42: c.7395_7404del10; p.Thr2466SerfsX33 | 10 bp deletion (FS) | Yes | Introns 27-38 | Intragenic NF1 | Array CGH | Mitotic recombination | 1/7 | 36 |