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Table 2 The mouse androgen-binding protein (ABP) family, complete with the newly proposed Scgb nomenclature

From: Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily

Gene symbol Adapted from Laukaitis (2008)[13] Location NCBI record Location
  Previous symbol Chr Strand Start End Gene symbol GI number Start End
Scgblblp B6_a1Ψ 7 - 32,040,110 32,041,296 Gm4360 100043323 32,040,902 32,041,296
Scgb2b1 B6_bg1 7 + 32,048,775 32,050,776     
Scgb1b2 B6_a2 7 - 32,075,661 32,076,819 Abph 57426 32,075,538 32,076,835
Scgb2b2 B6_bg2 7 + 32,087,800 32,089,833 Abpe 381970 32,087,788 32,089,996
Scgb2b3p B6_bg3Ψ 7 - 32,144,059 32,147,091 Gm4362 100043326 32,144,057 32,147,091
Scgb1b3 B6_a3 7 + 32,160,626 32,161,811 Gm5325 384585 32,160,617 32,161,935
Scgb2b4p B6_bg4Ψ 7 - 32,186,052 32,188,197     
Scgb1b4p B6_a4Ψ 7 + 32,194,693 32,195,875     
Scgb1b28p B6_a28Ψ 7 + 32,228,841 32,230,016     
Scgb2b5p B6_bg5Ψ 7 - 32,285,202 32,287,735     
Scgb1b5p B6_a5Ψ 7 + 32,292,459 32,292,831     
Scgb2b28p B6_b28Ψ 7 - 32,330,062 32,331,828     
Scgb2b6p B6_bg6Ψ 7 - 32,402,759 32,404,545 Gm19607 100503242 32,402,757 32,404,545
Scgb1b6p B6_a6Ψ 7 + 32,410,618 32,411,808     
Scgb2b7 B6_bg7 7 - 32,488,962 32,490,757 Gm4684 100043836 32,488,798 32,490,772
Scgb1b7 B6_a7 7 + 32,497,700 32,498,874 Gm6662 626305 32,497,690 32,498,998
Scgb2b8p B6_bg8Ψ 7 - 32,563,799 32,565,577     
Scgb1b8p B6_a8Ψ 7 + 32,573,297 32,574,476     
Scgb2b9p B6_bg9Ψ 7 - 32,700,256 32,702,404     
Scgb1b9p B6_a9Ψ 7 + 32,709,361 32,710,545     
Scgb2b29p B6_bg29Ψ 7 - 32,798,052 32,799,818     
Scgb2b10p B6_bg10Ψ 7 - 32,877,166 32,878,958 Gm6513 624584 32,877,164 32,878,958
Scgb1b10 B6_a10 7 + 32,885,887 32,887,066 Gm4384 100043355 32,885,888 32,887,069
Scgb2bg30p BG_bg30Ψ 7 - 32,931,261 32,933,051     
Scgb2b11 B6_bg11 7 - 32,994,356 32,996,142 Gm4687 100043842 32,994,354 32,996,142
Scgb1b11 B6_a11 7 + 33,007,875 33,009,053     
Scgb2b12 B6_bg12 7 - 33,110,463 33,112,248 Gm9138 668379 33,110,305 33,112,248
Scgb1b12 B6_a12 7 + 33,119,216 33,120,398 Gm9140 668381 33,119,217 33,120,401
Scgb1b29 B6_a29 7 + 33,226,559 33,227,738 Gm5326 384589 33,226,560 33,227,863
Scgb2b13p B6_bg13Ψ 7 - 33,292,522 33,294,299     
Scgb1b13p B6_a13Ψ 7 + 33,302,029 33,303,208     
Scgb2b14p B6_bg14Ψ 7 - 33,432,671 33,434,820     
Scgb1b14p B6_a14Ψ 7 + 33,441,783 33,442,968     
Scgb2bg31p BG_bg31Ψ 7 - 33,530,315 33,532,081     
Scgb2b15p B6_bg15Ψ 7 - 33,612,867 33,614,659 Gm6504 624439 33,612,702 33,614,672
Scgb1b15 B6_a15 7 + 33,621,588 33,622,767 Gm4399 100043376 33,621,589 33,622,770
Scgb2b16p B6_bg16Ψ 7 - 33,659,561 33,661,710     
Scgb1b16p B6_a16Ψ 7 + 33,668,673 33,669,858 Gm4404 100043383 33,668,674 33,669,068
Scgb2bg32p BG_bg32Ψ 7 - 33,757,214 33,758,980     
Scgb2b17p B6_bg17Ψ 7 - 33,839,766 33,841,558 Gm9223 668526 33,839,601 33,841,571
Scgb1b17 B6_a17 7 + 33,848,483 33,849,662 Gm4406 100043388 33,848,484 33,849,665
Scgb2bg33p BG_bg33Ψ 7 - 33,896,690 33,898,477     
Scgb2b18 B6_bg18 7 - 33,957,075 33,958,861 Gm4692 100043856 33,957,073 33,958,861
Scgb1b18 B6_a18 7 + 33,970,586 33,971,764     
Scgb2b19 B6_bg19 7 - 34,063,553 34,065,338 Gm5894 545947 34,063,551 34,065,338
Scgb1b19 B6_a19 7 + 34,072,325 34,073,507 Gm5632 434676 34,072,326 34,073,510
Scgb2b20 B6_bg20 7 - 34,149,526 34,151,319 Abpd 494519 34,149,362 34,151,338
Scgb1b20 B6_a20 7 + 34,158,268 34,159,452 Gm5895 545948 34,158,259 34,159,577
Scgb2bg34p BG_bg34Ψ 7 - 34,228,045 34,229,836     
Scgb2b21 B6_bg21 7 - 34,303,665 34,305,459 Gm6725 626970 34,303,663 34,305,459
Scgb1b21p B6_a21Ψ 7 + 34,312,394 34,313,577     
Scgb2b22p B6_bg22Ψ 7 - 34,389,300 34,391,071     
Scgb1b22p B6_a22Ψ 7 + 34,399,640 34,400,823     
Scgb2b23p B6_bg23Ψ 7 - 34,410,332 34,412,120 Scgb2b1-ps 353109 34,410,165 34,412,120
Scgb1b23p B6_a23Ψ 7 + 34,420,180 34,421,351     
Scgb2b24 B6_bg24 7 - 34,522,368 34,524,304 Abpz 233090 34,522,212 34,524,314
Scgb1b24 B6_a24 7 + 34,528,817 34,529,998 Gm12769 100043860 34,528,818 34,530,122
Scgb2b25p B6_bg25Ψ 7 - 34,638,053 34,639,837 Gm12777 627079 34,639,065 34,639,837
Scgb1b25p B6_a25Ψ 7 + 34,652,959 34,654,103     
Scgb2b26 B6_bg26 7 - 34,728,187 34,729,983 Abpg 110187 34,728,016 34,730,004
Scgb1b26p B6_a26Ψ 7 + 34,743,823 34,745,002 Gm12759 100043864 34,743,824 34,745,005
Scgb2b27 B6_bg27 7 - 34,797,105 34,798,885 Abpb 233099 34,796,951 34,798,961
Scgb1b27 B6_a27 7 + 34,806,586 34,807,768 Abpa 11354 34,806,586 34,807,900
Scgb1b30p B6_a30Ψ 7 + 34,880,532 34,885,724 Gm12776 100043868 34,880,450 34,885,856
  1. Indicated are the recommended gene symbol, previously published symbol, chromosomal location (Chr), strand, and start and end locations. These data were adapted from Laukaitis et al. [13]. Genomic locations were updated from Build 36 (mm8) of the mouse to Build 37 (mm9) using the University of California, Santa Cruz (UCSC) BLAT tool. Records from the National Center for Biotechnology Information (NCBI) gene database that correspond to mouse ABPs were aligned to these records using TCOFFEE [14] and analysed using nearest-neighbour-joining methods, as well as using 10,000 bootstrap replicates in the Phylip package;[19] analogous records are placed on the same line. In some cases, the start and end locations are different from those reported by Laukaitis et al., presumably because of differences in gene prediction algorithms