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Table 2 The mouse androgen-binding protein (ABP) family, complete with the newly proposed Scgb nomenclature

From: Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily

Gene symbol

Adapted from Laukaitis (2008)[13]

Location

NCBI record

Location

 

Previous symbol

Chr

Strand

Start

End

Gene symbol

GI number

Start

End

Scgblblp

B6_a1Ψ

7

-

32,040,110

32,041,296

Gm4360

100043323

32,040,902

32,041,296

Scgb2b1

B6_bg1

7

+

32,048,775

32,050,776

    

Scgb1b2

B6_a2

7

-

32,075,661

32,076,819

Abph

57426

32,075,538

32,076,835

Scgb2b2

B6_bg2

7

+

32,087,800

32,089,833

Abpe

381970

32,087,788

32,089,996

Scgb2b3p

B6_bg3Ψ

7

-

32,144,059

32,147,091

Gm4362

100043326

32,144,057

32,147,091

Scgb1b3

B6_a3

7

+

32,160,626

32,161,811

Gm5325

384585

32,160,617

32,161,935

Scgb2b4p

B6_bg4Ψ

7

-

32,186,052

32,188,197

    

Scgb1b4p

B6_a4Ψ

7

+

32,194,693

32,195,875

    

Scgb1b28p

B6_a28Ψ

7

+

32,228,841

32,230,016

    

Scgb2b5p

B6_bg5Ψ

7

-

32,285,202

32,287,735

    

Scgb1b5p

B6_a5Ψ

7

+

32,292,459

32,292,831

    

Scgb2b28p

B6_b28Ψ

7

-

32,330,062

32,331,828

    

Scgb2b6p

B6_bg6Ψ

7

-

32,402,759

32,404,545

Gm19607

100503242

32,402,757

32,404,545

Scgb1b6p

B6_a6Ψ

7

+

32,410,618

32,411,808

    

Scgb2b7

B6_bg7

7

-

32,488,962

32,490,757

Gm4684

100043836

32,488,798

32,490,772

Scgb1b7

B6_a7

7

+

32,497,700

32,498,874

Gm6662

626305

32,497,690

32,498,998

Scgb2b8p

B6_bg8Ψ

7

-

32,563,799

32,565,577

    

Scgb1b8p

B6_a8Ψ

7

+

32,573,297

32,574,476

    

Scgb2b9p

B6_bg9Ψ

7

-

32,700,256

32,702,404

    

Scgb1b9p

B6_a9Ψ

7

+

32,709,361

32,710,545

    

Scgb2b29p

B6_bg29Ψ

7

-

32,798,052

32,799,818

    

Scgb2b10p

B6_bg10Ψ

7

-

32,877,166

32,878,958

Gm6513

624584

32,877,164

32,878,958

Scgb1b10

B6_a10

7

+

32,885,887

32,887,066

Gm4384

100043355

32,885,888

32,887,069

Scgb2bg30p

BG_bg30Ψ

7

-

32,931,261

32,933,051

    

Scgb2b11

B6_bg11

7

-

32,994,356

32,996,142

Gm4687

100043842

32,994,354

32,996,142

Scgb1b11

B6_a11

7

+

33,007,875

33,009,053

    

Scgb2b12

B6_bg12

7

-

33,110,463

33,112,248

Gm9138

668379

33,110,305

33,112,248

Scgb1b12

B6_a12

7

+

33,119,216

33,120,398

Gm9140

668381

33,119,217

33,120,401

Scgb1b29

B6_a29

7

+

33,226,559

33,227,738

Gm5326

384589

33,226,560

33,227,863

Scgb2b13p

B6_bg13Ψ

7

-

33,292,522

33,294,299

    

Scgb1b13p

B6_a13Ψ

7

+

33,302,029

33,303,208

    

Scgb2b14p

B6_bg14Ψ

7

-

33,432,671

33,434,820

    

Scgb1b14p

B6_a14Ψ

7

+

33,441,783

33,442,968

    

Scgb2bg31p

BG_bg31Ψ

7

-

33,530,315

33,532,081

    

Scgb2b15p

B6_bg15Ψ

7

-

33,612,867

33,614,659

Gm6504

624439

33,612,702

33,614,672

Scgb1b15

B6_a15

7

+

33,621,588

33,622,767

Gm4399

100043376

33,621,589

33,622,770

Scgb2b16p

B6_bg16Ψ

7

-

33,659,561

33,661,710

    

Scgb1b16p

B6_a16Ψ

7

+

33,668,673

33,669,858

Gm4404

100043383

33,668,674

33,669,068

Scgb2bg32p

BG_bg32Ψ

7

-

33,757,214

33,758,980

    

Scgb2b17p

B6_bg17Ψ

7

-

33,839,766

33,841,558

Gm9223

668526

33,839,601

33,841,571

Scgb1b17

B6_a17

7

+

33,848,483

33,849,662

Gm4406

100043388

33,848,484

33,849,665

Scgb2bg33p

BG_bg33Ψ

7

-

33,896,690

33,898,477

    

Scgb2b18

B6_bg18

7

-

33,957,075

33,958,861

Gm4692

100043856

33,957,073

33,958,861

Scgb1b18

B6_a18

7

+

33,970,586

33,971,764

    

Scgb2b19

B6_bg19

7

-

34,063,553

34,065,338

Gm5894

545947

34,063,551

34,065,338

Scgb1b19

B6_a19

7

+

34,072,325

34,073,507

Gm5632

434676

34,072,326

34,073,510

Scgb2b20

B6_bg20

7

-

34,149,526

34,151,319

Abpd

494519

34,149,362

34,151,338

Scgb1b20

B6_a20

7

+

34,158,268

34,159,452

Gm5895

545948

34,158,259

34,159,577

Scgb2bg34p

BG_bg34Ψ

7

-

34,228,045

34,229,836

    

Scgb2b21

B6_bg21

7

-

34,303,665

34,305,459

Gm6725

626970

34,303,663

34,305,459

Scgb1b21p

B6_a21Ψ

7

+

34,312,394

34,313,577

    

Scgb2b22p

B6_bg22Ψ

7

-

34,389,300

34,391,071

    

Scgb1b22p

B6_a22Ψ

7

+

34,399,640

34,400,823

    

Scgb2b23p

B6_bg23Ψ

7

-

34,410,332

34,412,120

Scgb2b1-ps

353109

34,410,165

34,412,120

Scgb1b23p

B6_a23Ψ

7

+

34,420,180

34,421,351

    

Scgb2b24

B6_bg24

7

-

34,522,368

34,524,304

Abpz

233090

34,522,212

34,524,314

Scgb1b24

B6_a24

7

+

34,528,817

34,529,998

Gm12769

100043860

34,528,818

34,530,122

Scgb2b25p

B6_bg25Ψ

7

-

34,638,053

34,639,837

Gm12777

627079

34,639,065

34,639,837

Scgb1b25p

B6_a25Ψ

7

+

34,652,959

34,654,103

    

Scgb2b26

B6_bg26

7

-

34,728,187

34,729,983

Abpg

110187

34,728,016

34,730,004

Scgb1b26p

B6_a26Ψ

7

+

34,743,823

34,745,002

Gm12759

100043864

34,743,824

34,745,005

Scgb2b27

B6_bg27

7

-

34,797,105

34,798,885

Abpb

233099

34,796,951

34,798,961

Scgb1b27

B6_a27

7

+

34,806,586

34,807,768

Abpa

11354

34,806,586

34,807,900

Scgb1b30p

B6_a30Ψ

7

+

34,880,532

34,885,724

Gm12776

100043868

34,880,450

34,885,856

  1. Indicated are the recommended gene symbol, previously published symbol, chromosomal location (Chr), strand, and start and end locations. These data were adapted from Laukaitis et al. [13]. Genomic locations were updated from Build 36 (mm8) of the mouse to Build 37 (mm9) using the University of California, Santa Cruz (UCSC) BLAT tool. Records from the National Center for Biotechnology Information (NCBI) gene database that correspond to mouse ABPs were aligned to these records using TCOFFEE [14] and analysed using nearest-neighbour-joining methods, as well as using 10,000 bootstrap replicates in the Phylip package;[19] analogous records are placed on the same line. In some cases, the start and end locations are different from those reported by Laukaitis et al., presumably because of differences in gene prediction algorithms