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Table 1 Softwares for estimating genetic ancestry

From: Softwares and methods for estimating genetic ancestry in human populations

Software

Global/local estimation

Operating Environments

Link

STRUCTURE

Global

Windows/DOS/Linux/Solaris/Mac

http://pritch.bsd.uchicago.edu/structure.html

frappe

Global

Windows/Linux/Mac

http://med.stanford.edu/tanglab/software/frappe.html

ADMIXTURE

Global

Linux/Mac

http://www.genetics.ucla.edu/software/admixture/index.html

EIGENSTRAT/smartpca

Global

Linux

http://www.hsph.harvard.edu/faculty/alkes-price/software/

ipPCA/EigenDev

Global

Windows/Linux (MatLab)

http://www4a.biotec.or.th/GI/tools/ippca

GEMTools

Global

Windows/Linux

http://www.wpic.pitt.edu/wpiccompgen/GemTools/GemTools.htm

PLINK

Global

Windows/Linux/Mac/C/C++

http://pngu.mgh.harvard.edu/~purcell/plink/

LAMP

Local and Global

Windows/Linux

http://lamp.icsi.berkeley.edu/lamp/

SABER

Local and Global

Linux

http://med.stanford.edu/tanglab/software/saber.html

HAPMIX

Local and Global

Unix/Linux/Windows

http://www.stats.ox.ac.uk/~myers/software.html

ANCESTRYMAP

Local and Global

Unix/Linux

http://genepath.med.harvard.edu/~reich/Software.htm