Table 2 SNP level and gene level overlap
Number of top SNPs | SNP level | Gene level | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Overlap | Mapped genes | Overlapa | ||||||||
| Â | EA and AA | EA and HA | AA and HA | EA, AA, and HA | EA | AA | HA | EA and AA | EA and HA | AA and HA | EA, AA, and HA |
1,000 | 2 | 2 | 0 | 0 | 328 | 299 | 252 | 41/5 | 30/4 | 29/4 | 11/0 |
2,000 | 4 | 7 | 0 | 0 | 616 | 531 | 450 | 110/16 | 77/12 | 72/14 | 34/0 |
5,000 | 39 | 40 | 33 | 0 | 1,272 | 1,121 | 961 | 322/71 | 266/54 | 242/61 | 126/3 |
10,000 | 170 | 235 | 145 | 3 | 2,120 | 1,882 | 1,677 | 686/199 | 624/158 | 575/178 | 353/18 |
50,000 | 3,549 | 4,228 | 3,463 | 284 | 5,600 | 5,515 | 5,193 | 3,163/1,544 | 3,041/1,431 | 2,962/1,454 | 2,151/401 |