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Table 4 Overlap of ranked SNPs (ranked by empirical p value from lowest to highest and binned in groups of 1,000) between runs

From: On the stability of the Bayenv method in assessing human SNP-environment associations

Range of ranked SNPs

Overlap proportion

1–1,000

0.44 ± 0.020

100,001–101,000

0.0073 ± 0.0033

200,001–201,000

0.0051 ± 0.0023

300,001–301,000

0.0043 ± 0.0016

400,001–401,000

0.0042 ± 0.0014

500,001–501,000

0.0035 ± 0.0014

600,001–601,000

0.014 ± 0.0098

  1. For each bin, we calculated the proportion of overlapping SNPs between each corresponding bin for all ten pairs of runs (Blair1-5). Table reports the mean and standard deviation of the overlap proportion across all pairs of runs. Only 1 bin per 100,000 SNPs is shown. Also, 623,318 total SNPs were used in the analysis.