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Table 5 Genic/non-genic enrichments for each climate variable in the indicated empirical tails

From: On the stability of the Bayenv method in assessing human SNP-environment associations

Climate variable

Data set

Empirical tail

  

0.05

0.01

0.005

Absolute latitude

Hancock1 (published results)

3

3

3

 

Hancock1 (our analysis)

1

2

2

 

Hancock2

3

3

3

 

Blair1

0

2

3

 

Blair2

0

3

3

 

Blair3

1

1

2

 

Blair4

1

3

3

 

Blair5

1

1

3

 

LongBlair1

3

3

3

 

LongBlair2

2

2

1

 

LongBlair3

1

2

2

 

LongBlair4

3

2

1

 

LongBlair5

2

2

3

 

W/O_Sib1

1

0

0

 

W/O_Sib2

0

1

2

 

W/O_Sib3

1

0

1

 

W/O_Sib4

0

0

0

 

W/O_Sib5

0

0

0

Summer maximum temperature

Hancock1 (published results)

0

0

2

 

Hancock1 (our analysis)

0

2

3

 

Hancock2

2

3

3

 

Blair1

0

0

0

 

Blair2

0

0

0

 

Blair3

0

1

0

 

Blair4

0

0

0

 

Blair5

1

0

0

 

LongBlair1

0

0

1

 

LongBlair2

0

1

0

 

LongBlair3

0

0

1

 

LongBlair4

0

2

2

 

LongBlair5

0

0

1

 

W/O_Sib1

3

2

2

 

W/O_Sib2

0

0

0

 

W/O_Sib3

0

0

0

 

W/O_Sib4

0

2

3

 

W/O_Sib5

3

0

0

Summer precipitation rate

Hancock1 (published results)

0

0

0

 

Hancock1 (our analysis)

0

0

0

 

Hancock2

0

0

0

 

Blair1

0

0

0

 

Blair2

0

0

0

 

Blair3

0

0

0

 

Blair4

0

0

0

 

Blair5

0

0

0

 

LongBlair1

0

0

0

 

LongBlair2

0

0

0

 

LongBlair3

0

0

0

 

LongBlair4

0

0

0

 

LongBlair5

0

0

0

 

W/O_Sib1

0

0

0

 

W/O_Sib2

0

0

0

 

W/O_Sib3

0

0

0

 

W/O_Sib4

0

0

0

 

W/O_Sib5

0

0

0

Summer solar radiation

Hancock1 (published results)

3

3

3

 

Hancock1 (our analysis)

3

3

3

 

Hancock2

0

1

3

 

Blair1

2

2

0

 

Blair2

0

0

0

 

Blair3

1

0

0

 

Blair4

0

0

0

 

Blair5

3

0

0

 

LongBlair1

2

3

3

 

LongBlair2

0

3

3

 

LongBlair3

2

0

0

 

LongBlair4

0

2

1

 

LongBlair5

0

3

3

 

W/O_Sib1

3

3

3

 

W/O_Sib2

1

0

0

 

W/O_Sib3

0

0

0

 

W/O_Sib4

1

0

0

 

W/O_Sib5

3

3

2

Summer relative humidity

Hancock1 (published results)

2

3

3

 

Hancock1 (our analysis)

2

3

3

 

Hancock2

0

3

3

 

Blair1

0

2

1

 

Blair2

2

0

0

 

Blair3

0

0

0

 

Blair4

0

2

0

 

Blair5

1

0

0

 

LongBlair1

0

0

0

 

LongBlair2

1

2

3

 

LongBlair3

0

2

1

 

LongBlair4

0

0

1

 

LongBlair5

1

1

1

 

W/O_Sib1

0

3

3

 

W/O_Sib2

2

3

2

 

W/O_Sib3

0

0

0

 

W/O_Sib4

1

2

1

 

W/O_Sib5

0

0

1

Winter minimum temperature

Hancock1 (published results)

1

0

0

 

Hancock1 (our analysis)

1

0

0

 

Hancock2

0

3

3

 

Blair1

0

1

2

 

Blair2

0

2

2

 

Blair3

0

1

2

 

Blair4

0

0

1

 

Blair5

0

1

1

 

LongBlair1

0

3

2

 

LongBlair2

0

2

2

 

LongBlair3

0

3

2

 

LongBlair4

0

2

2

 

LongBlair5

0

3

3

 

W/O_Sib1

0

0

0

 

W/O_Sib2

0

2

0

 

W/O_Sib3

1

0

2

 

W/O_Sib4

0

1

3

 

W/O_Sib5

0

1

2

Winter precipitation rate

Hancock1 (published results)

0

3

3

 

Hancock1 (our analysis)

1

3

3

 

Hancock2

2

0

0

 

Blair1

2

0

0

 

Blair2

0

1

0

 

Blair3

2

1

0

 

Blair4

2

3

3

 

Blair5

0

0

0

 

LongBlair1

0

0

0

 

LongBlair2

0

0

0

 

LongBlair3

0

0

0

 

LongBlair4

0

0

0

 

LongBlair5

0

2

0

 

W/O_Sib1

0

0

2

 

W/O_Sib2

0

2

3

 

W/O_Sib3

0

0

0

 

W/O_Sib4

0

3

2

 

W/O_Sib5

3

1

2

Winter relative humidity

Hancock1 (published results)

3

3

3

 

Hancock1 (our analysis)

3

2

2

 

Hancock2

3

3

3

 

Blair1

3

3

3

 

Blair2

3

3

2

 

Blair3

3

1

3

 

Blair4

3

3

3

 

Blair5

3

1

0

 

LongBlair1

3

3

0

 

LongBlair2

3

3

2

 

LongBlair3

3

3

2

 

LongBlair4

2

0

0

 

LongBlair5

3

2

1

 

W/O_Sib1

3

2

2

 

W/O_Sib2

3

2

3

 

W/O_Sib3

3

3

2

 

W/O_Sib4

3

3

3

 

W/O_Sib5

3

3

0

Winter solar radiation

Hancock1 (published results)

3

1

1

 

Hancock1 (our analysis)

3

0

2

 

Hancock2

3

2

0

 

Blair1

3

1

0

 

Blair2

3

2

1

 

Blair3

3

0

0

 

Blair4

3

0

0

 

Blair5

2

1

0

 

LongBlair1

3

0

0

 

LongBlair2

3

2

0

 

LongBlair3

3

2

1

 

LongBlair4

3

3

2

 

LongBlair5

3

1

0

 

W/O_Sib1

3

0

0

 

W/O_Sib2

3

1

2

 

W/O_Sib3

3

0

0

 

W/O_Sib4

3

3

2

 

W/O_Sib5

2

0

1

  1. The table shows the number of stars of significance for genic/non-genic enrichments in the 0.05, 0.01, and 0.005 tails of the empirical p value distribution for each indicated run (defined as in Table 1 and in the ‘Methods’ section). ‘1’ denotes 95%–97.5% of bootstraps had an enrichment of genic compared to non-genic SNPs in that empirical tail, ‘2’ denotes 97.5%–99%, and ‘3’ denotes >99%. ‘0’ denotes that a genic enrichment is not significant (i.e., that <95% of the bootstraps had an enrichment). Enrichments for the nine environmental variables that were shown in Hancock et al. [40] are shown here.