Table 1 UnifiedGenotyper Variant Quality Score Recalibration (UGVR) versus Hard Filter (UGHF)
From: Validation and assessment of variant calling pipelines for next-generation sequencing
| Â | UGHF | |||
|---|---|---|---|---|
| Â | Â | AA | AB | BB |
UGVR | AA | 513,601 | 31 [5, 0, 0, 26] | 49 [0, 0, 0, 49] |
AB | 0 | 296,714 | 0 | |
| Â | BB | 0 | 1,235 [0, 6, 1,222, 7] | 170,818 |