Table 2 UnifiedGenotyper Variant Quality Score Recalibration (UGVR) versus HaplotypeCaller Variant Quality Score Recalibration (HCVR)
From: Validation and assessment of variant calling pipelines for next-generation sequencing
| Â | UGVR | |||
|---|---|---|---|---|
| Â | Â | AA | AB | BB |
HCVR | AA | 510,296 | 194 [176, 17, 0, 1] | [0, 0, 0, 0] |
AB | 196 [60, 133, 2, 1] | 294,595 | 210 [0, 5, 204, 1] | |
| Â | BB | 5 [0, 0, 5, 0] | 230 [0, 10, 219, 1] | 171,086 |