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Table 1 Software for genomic feature-based survival analysis

From: Survival analysis tools in genomics research

Software User interface (programming language) Functionality Reference URL
Significance Analysis of Microarrays (SAM) Graphical (Excel add-on), command-line (R) Feature selection [3],[4] [11]
GenePatterna Graphical Feature selection, assessment of survival association, model building [5] [12],[13]
Partial Cox regression analysis Command-line (R) Feature selection, assessment of survival association, model building [7] b
Net-Cox Command-line (Matlab) Feature selection, assessment of survival association, model building [8] [14]
survcomp Command-line (R) Model comparison [10] [15]
  1. aSurvivalGene, PrognosticGene, and LoocvSurvival modules deposited in [13].
  2. bSource code available upon request to the authors.
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Human Genomics

ISSN: 1479-7364