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Table 1 Software for genomic feature-based survival analysis

From: Survival analysis tools in genomics research

Software

User interface (programming language)

Functionality

Reference

URL

Significance Analysis of Microarrays (SAM)

Graphical (Excel add-on), command-line (R)

Feature selection

[3],[4]

[11]

GenePatterna

Graphical

Feature selection, assessment of survival association, model building

[5]

[12],[13]

Partial Cox regression analysis

Command-line (R)

Feature selection, assessment of survival association, model building

[7]

b

Net-Cox

Command-line (Matlab)

Feature selection, assessment of survival association, model building

[8]

[14]

survcomp

Command-line (R)

Model comparison

[10]

[15]

  1. aSurvivalGene, PrognosticGene, and LoocvSurvival modules deposited in [13].
  2. bSource code available upon request to the authors.