Table 2 Deletion RCNAs detected by 145 WES data and 15 WGS data

1p36.11

chr1:19.53-31.73

12.21

WES

9.12E−04

Y

Y

Y

1p31.1

chr1:45.53-100.32

54.79

WES

5.89E−02

1p21.1

chr1:104.12-107.60

3.48

WES

2.86E−04

1p13.2

chr1:115.32-115.58

0.26

WES

5.65E−04

Y

1q31.3

chr1:186.41-200.18

13.77

WES

1.16E−02

2q22.1

chr2:136.87-149.40

12.53

WES

8.62E−02

Y

Y

2q32.1

chr2:179.23-190.43

11.20

WES

6.27E−02

3p26.3

chr3:0.00-2.61

2.61

WES

3.97E−08

3p24.3

chr3:12.79-69.03

56.24

WES and WGS

3.19E−02

Y

Y

Y

Y

3p12.3

chr3:75.71-88.10

12.39

WES

2.29E−03

4p16.1

chr4:0.00-15.97

15.97

WES and WGS

2.81E−02

4p15.31

chr4:17.84-24.53

6.69

WES

9.06E−03

Y

4p12

chr4:42.15-47.45

5.30

WES

5.30E−02

4q13.2

chr4:69.34-71.25

1.91

WES

2.49E−02

4q22.1

chr4:90.88-93.23

2.35

WGS

9.73E−02

Y

Y

Y

4q28.3

chr4:129.78-139.98

10.20

WES

3.52E−02

4q32.1

chr4:154.56-159.59

5.03

WES

9.27E−02

Y

4q32.3

chr4:164.44-165.88

1.44

WES

1.84E−02

4q34.3

chr4:174.30-191.15

16.86

WES

2.50E−03

Y

Y

Y

5q12.1

chr5:58.15-59.79

1.64

WGS

4.42E−02

Y

Y

Y

Y

Y

5q13.1

chr5:66.46-68.46

2.00

WES

3.52E−06

Y

5q14.3

chr5:79.47-130.52

51.04

WES

1.41E−03

Y

6p25.3

chr6:0.00-2.62

2.62

WES

3.97E−07

Y

Y

Y

6p12.3

chr6:49.82-50.79

0.97

WES

8.30E−03

6p22.2

chr6:24.98-25.73

0.75

WES

1.97E−02

6p21.33

chr6:31.17-31.32

0.15

WGS

3.97E−03

6q12

chr6:64.42-71.14

6.72

WES

3.62E−03

6q16.1

chr6:90.58-97.25

6.67

WES

2.08E−02

Y

6q16.3

chr6:100.06-105.41

5.35

WES

4.82E−02

Y

6q22.31

chr6:123.37-124.60

1.23

WES

1.21E−04

6q27

chr6:151.79-171.12

19.33

WES

2.27E−02

Y

Y

Y

7q31.1

chr7:105.14-128.47

23.33

WES and WGS

8.30E−03

Y

Y

Y

7q34

chr7:141.64-141.95

0.31

WES

2.45E−06

Y

Y

8p23.2

chr8:0.00-6.26

6.27

WES

9.89E−05

Y

Y

Y

Y

8p23.1

chr8:7.83-10.39

2.55

WES

2.59E−02

8p21.2

chr8:23.42-24.77

1.35

WES

1.73E−05

Y

8p11.22

chr8:38.85-39.78

0.92

WES

5.30E−02

Y

9p23

chr9:6.64-15.17

8.53

WES

1.10E−06

Y

Y

Y

Y

9p21.3

chr9:21.86-23.69

1.83

WES and WGS

1.35E−34

Y

Y

Y

Y

Y

9q12

chr9:43.13-66.51

23.38

WES

3.52E−02

9q31.1

chr9:70.49-123.15

52.66

WES

2.49E−02

10q23.31

chr10:89.55-94.21

4.67

WES

2.63E−05

Y

11p15.4

chr11:0.00-8.94

8.94

WES

1.05E−02

Y

11p11.12

chr11:49.00-57.07

8.07

WES

8.36E−02

11q14.1

chr11:77.96-111.96

33.99

WES

6.27E−02

Y

11q25

chr11:126.13-135.01

8.88

WES

4.23E−03

Y

Y

Y

12p13.31

chr12:9.47-9.75

0.29

WES

4.82E−02

12q12

chr12:33.56-48.13

14.57

WES

5.89E−02

12q21.31

chr12:70.76-93.77

23.01

WES

4.23E−03

Y

13q31.1

chr13:61.10-95.23

34.12

WES

2.38E−02

14p11.2

chr14:0.00-20.48

20.48

WES

8.69E−03

14q13.3

chr14:36.79-37.64

0.86

WES

5.30E−02

Y

14q32.13

chr14:94.16-96.85

2.69

WES

1.39E−02

14q32.2

chr14:97.03-107.35

10.32

WES

2.37E−04

15q11.2

chr15:20.78-22.69

1.91

WES

2.59E−02

Y

Y

Y

15q24.2

chr15:74.01-77.71

3.71

WGS

6.84E−02

16p13.3

chr16:0.00-4.90

4.90

WES

2.10E−05

Y

16q21

chr16:29.48-90.35

60.88

WES and WGS

7.29E−02

Y

Y

Y

Y

17p12

chr17:0.00-18.02

18.02

WES

3.43E−03

Y

17p11.2

chr17:18.42-18.54

0.12

WES

2.20E−13

Y

Y

18q12.1

chr18:24.60-28.65

4.04

WES and WGS

6.80E−03

Y

Y

18q12.3

chr18:35.15-42.28

7.14

WES and WGS

5.53E−07

Y

Y

18q21.2

chr18:48.59-50.28

1.69

WES and WGS

2.87E−13

Y

Y

Y

Y

18q23

chr18:67.87-78.08

10.21

WES and WGS

8.67E−05

Y

Y

Y

19p13.3

chr19:0.00-10.66

10.65

WES

6.47E−04

Y

20p12.1

chr20:13.97-16.04

2.06

WGS

2.93E−02

Y

Y

Y

21p11.2

chr21:0.00-15.32

15.32

WGS

1.77E−02

Y

21q21.1

chr21:19.63-27.01

7.38

WES

4.49E−05

Y

Y

21q22.3

chr21:47.86-48.13

0.27

WES and WGS

2.64E−04

Y

22q11.23

chr22:24.33-24.37

0.05

WGS

3.83E−02

Y

Xp22.33

chrX:0.00-2.67

2.67

WES

8.13E−33

Xp21.1

chrX:30.87-32.66

1.79

WES and WGS

2.99E−04

Y

Y

Xq28

chrX:154.75-155.27

0.52

WES

2.55E−17

Y

Yq12

chrY:20.89-59.22

38.33

WES and WGS

4.08E−03