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Table 3 Comparison of results of Dulak et al. [14] to our results

From: Copy number alterations detected by whole-exome and whole-genome sequencing of esophageal adenocarcinoma

Cytoband

Boundary (Mb)

Width (Mb)

Our study

Residual q value

Type

12p12.1

chr12:25.34-25.45

0.11

Y

2.63E−32

amp

18q11.2

chr18:19.70-19.91

0.21

Y

5.94E−11

amp

8p23.1

chr8:11.37-11.67

0.30

Y

4.25E−13

amp

19q12

chr19:30.25-30.41

0.16

Y

6.69E−15

amp

7q21.2

chr7:92.48-92.66

0.18

Y

5.07E−12

amp

11q13.3

chr11:69.26-69.81

0.55

Y

5.25E−16

amp

17q12

chr17:37.72-38.02

0.30

Y

1.04E−24

amp

17q21.2

chr17:39.77-39.96

0.19

Y

1.90E−08

amp

7p11.2

chr7:54.95-55.43

0.48

Y

5.48E−14

amp

8q24.21

chr8:128.40-128.84

0.44

Y

1.79E−10

amp

6p21.1

chr6:43.21-43.35

0.14

Y

2.00E−13

amp

9p13.3

chr9:35.48-35.94

0.46

Y

5.60E−06

amp

13q13.1

chr13:33.38-34.43

1.05

Y

8.76E−04

amp

7q22.1

chr7:99.29-100.00

0.71

Y

7.81E−07

amp

7q31.2

chr7:116.13-116.63

0.50

Y

1.71E−02

amp

12q15

chr12:67.27-70.21

2.94

Y

3.88E−02

amp

6q23.3

chr6:135.28-135.83

0.55

Y

4.98E−04

amp

10q22.2

chr10:75.33-76.13

0.80

  

amp

1q21.3

chr1:147.76-154.10

6.34

Y

2.14E−05

amp

10q26.13

chr10:122.76-123.92

1.16

  

amp

3q26.2

chr3:168.72-172.28

3.56

Y

4.18E−02

amp

18q11.2

chr18:23.45-24.21

0.76

Y

5.94E−11

amp

13q14.11

chr13:41.37-41.93

0.56

Y

1.99E−02

amp

11p14.1

chr11:27.08-27.61

0.53

  

amp

7q34a

chr7:141.92-142.26

0.34

  

amp

3p14.2

chr3:58.98-61.54

2.56

Y

3.19E−02

del

16q23.1

chr16:78.13-79.65

1.52

Y

7.29E−02

del

9p21.3

chr9:21.86-22.02

0.16

Y

1.35E−34

del

5q12.1

chr5:58.26-59.79

1.53

Y

4.42E−02

del

6p25.3

chr6:1.60-2.63

1.03

Y

3.97E−07

del

20p12.1

chr20:14.26-16.04

1.78

Y

2.93E−02

del

4q22.1

chr4:91.15-93.27

2.12

Y

9.73E−02

del

18q21.2

chr18:48.52-48.72

0.20

Y

2.87E−13

del

21q22.12

chr21:36.11-36.43

0.32

  

del

9p23

chr9:7.79-12.72

4.93

Y

1.10E−06

del

6q26

chr6:161.69-163.21

1.52

Y

2.27E−02

del

2q33.3

chr2:204.82-206.56

1.74

  

del

1q44

chr1:245.85-246.71

0.86

  

del

8p23.3

chr8:1.01-1.46

0.45

Y

9.89E−05

del

7q33

chr7:123.66-142.53

18.87

Y

8.30E−03

del

7q36.1

chr7:148.11-159.13

11.02

  

del

1p36.11

chr1:25.77-31.25

5.48

Y

9.12E−04

del

4q34.3

chr4:178.82-185.31

6.49

Y

2.50E−03

del

11q22.3

chr11:105.95-112.83

6.88

Y

6.27E−02

del

11q25

chr11:121.03-134.94

13.91

Y

4.23E−03

del

21p11.2a

chr21:1.00-16.26

15.26

Y

1.77E−02

del

  1. Regions detected in Dulak et al., 2012 [14] were verified in our study
  2. aIn cytoband indicates that the coordinate is based on hg18