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Table 1 Census of transcripts and their biotypes across all GENCODE versions

From: Navigating the dynamic landscape of long noncoding RNA and protein-coding gene annotations in GENCODE

S.No GENCODE versions Freeze year No. of Havana transcripts No. of Ensembl transcripts Total transcripts No. of Havana converted to Ensembl ID Total number of unique transcript IDs which were considered No. of biotypes No. of lncRNA biotypes
1 1 2008 67,432 16,293 83,725 66,579 87,852 37 14
2 2 2009 79,899 14,505 94,404 76,890 98,855 36 14
3 2a 2009 83,049 13,352 96,401 81,833 1,01,088 35 14
4 2b 2009 83,049 20,570 10,3619 81,833 1,08,145 39 14
5 v3b 2009 7896 1,19,809 1,27,705 7669 1,27,773 38 14
6 v3c 2009 0 13,2067 1,32,067 0 1,31,891 37 14
7 v3d 2009 0 1,34,266 1,34,266 0 1,34,267 38 15
8 4 2010 0 1,42,637 1,42,637 0 1,42,467 41 15
9 5 2010 0 1,48,880 1,48,880 0 1,48,710 43 15
10 6 2010 0 1,58,489 1,58,489 0 1,58,321 44 16
11 7 2010 0 1,61,375 1,61,375 0 1,61,214 44 16
12 8 2011 0 1,65,067 1,65,067 0 1,64,906 46 18
13 9 2011 0 1,69,419 1,69,419 0 1,69,257 50 20
14 10 2011 0 1,72,975 1,72,975 0 1,72,810 51 20
15 11 2011 0 1,80,272 1,80,272 0 1,80,107 51 19
16 12 2011 0 1,83,086 1,83,086 0 1,82,921 50 19
17 13 2012 0 1,82,967 1,82,967 0 1,82,798 41 18
18 14 2012 0 1,90,051 1,90,051 0 1,89,882 41 18
19 15 2012 0 1,95,433 1,95,433 0 1,95,264 40 17
20 16 2012 0 1,94,034 1,94,034 0 1,93,865 40 17
21 17 2013 0 1,94,871 1,94,871 0 1,94,702 38 15
22 18 2013 0 1,95,584 1,95,584 0 1,95,418 38 14
23 19 2013 0 1,96,520 1,96,520 0 1,96,354 38 14
24 20 2014 0 1,94,334 1,94,334 0 1,94,173 38 14
25 21 2014 0 1,96,327 1,96,327 0 1,96,165 43 17
26 22 2014 0 1,98,442 1,98,442 0 1,98,278 47 17
27 23 2015 0 1,98,619 1,98,619 0 1,98,455 45 16
28 24 2015 0 1,99,169 1,99,169 0 1,99,005 47 18