Navigating the dynamic landscape of long noncoding RNA and protein-coding gene annotations in GENCODE

Table 1 Census of transcripts and their biotypes across all GENCODE versions

S.No	GENCODE versions	Freeze year	No. of Havana transcripts	No. of Ensembl transcripts	Total transcripts	No. of Havana converted to Ensembl ID	Total number of unique transcript IDs which were considered	No. of biotypes	No. of lncRNA biotypes
1	1	2008	67,432	16,293	83,725	66,579	87,852	37	14
2	2	2009	79,899	14,505	94,404	76,890	98,855	36	14
3	2a	2009	83,049	13,352	96,401	81,833	1,01,088	35	14
4	2b	2009	83,049	20,570	10,3619	81,833	1,08,145	39	14
5	v3b	2009	7896	1,19,809	1,27,705	7669	1,27,773	38	14
6	v3c	2009	0	13,2067	1,32,067	0	1,31,891	37	14
7	v3d	2009	0	1,34,266	1,34,266	0	1,34,267	38	15
8	4	2010	0	1,42,637	1,42,637	0	1,42,467	41	15
9	5	2010	0	1,48,880	1,48,880	0	1,48,710	43	15
10	6	2010	0	1,58,489	1,58,489	0	1,58,321	44	16
11	7	2010	0	1,61,375	1,61,375	0	1,61,214	44	16
12	8	2011	0	1,65,067	1,65,067	0	1,64,906	46	18
13	9	2011	0	1,69,419	1,69,419	0	1,69,257	50	20
14	10	2011	0	1,72,975	1,72,975	0	1,72,810	51	20
15	11	2011	0	1,80,272	1,80,272	0	1,80,107	51	19
16	12	2011	0	1,83,086	1,83,086	0	1,82,921	50	19
17	13	2012	0	1,82,967	1,82,967	0	1,82,798	41	18
18	14	2012	0	1,90,051	1,90,051	0	1,89,882	41	18
19	15	2012	0	1,95,433	1,95,433	0	1,95,264	40	17
20	16	2012	0	1,94,034	1,94,034	0	1,93,865	40	17
21	17	2013	0	1,94,871	1,94,871	0	1,94,702	38	15
22	18	2013	0	1,95,584	1,95,584	0	1,95,418	38	14
23	19	2013	0	1,96,520	1,96,520	0	1,96,354	38	14
24	20	2014	0	1,94,334	1,94,334	0	1,94,173	38	14
25	21	2014	0	1,96,327	1,96,327	0	1,96,165	43	17
26	22	2014	0	1,98,442	1,98,442	0	1,98,278	47	17
27	23	2015	0	1,98,619	1,98,619	0	1,98,455	45	16
28	24	2015	0	1,99,169	1,99,169	0	1,99,005	47	18

ISSN: 1479-7364