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Table 2 Details of all the biotypes used in GENCODE and their respective codes as used in our study

From: Navigating the dynamic landscape of long noncoding RNA and protein-coding gene annotations in GENCODE

Biotype name Code given
3 prime overlapping ncrna 1
Ambiguous orf 2
Antisense 3
Artifact 4
Bidirectional promoter lncrna 5
C segment 6
Disrupted domain 7
IG C gene 8
IG C pseudogene 9
IG D gene 10
ig gene 11
IG gene 12
IG J gene 13
IG J pseudogene 14
IG pseudogene|ig pseudogene 15
IG V gene 16
IG V pseudogene 17
J segment 18
Known ncrna 19
lincRNA 20
macro lncRNA 21
miRNA 22
miRNA pseudogene 23
misc RNA 24
misc RNA pseudogene 25
Mt rRNA 26
Mt tRNA 27
Mt tRNA pseudogene 28
ncrna host 29
Non-coding 30
Non-stop decay 31
Nonsense-mediated decay 32
Polymorphic pseudogene 33
Processed pseudogene 34
Processed transcript 35
Protein coding 36
Pseudogene 37
Retained intron 38
Retrotransposed 39
Ribozyme 40
rRNA 41
rRNA pseudogene 42
scaRNA 43
scRNA 44
scRNA pseudogene 45
Sense intronic 46
Sense overlapping 47
snoRNA 48
snoRNA pseudogene 49
snRNA 50
snRNA pseudogene 51
TEC|tec 52
TR C gene 53
TR D gene 54
TR gene 55
TR J gene 56
TR J pseudogene 57
TR pseudogene 58
TR V gene 59
TR V pseudogene 60
Transcribed processed pseudogene 61
Transcribed pseudogene 62
Transcribed unitary pseudogene 63
Transcribed unprocessed pseudogene 64
Translated processed pseudogene 65
Translated unprocessed pseudogene 66
tRNA pseudogene 67
Unitary pseudogene 68
Unprocessed pseudogene 69
V segment 70
Vaultrna 71
sRNA 72