Navigating the dynamic landscape of long noncoding RNA and protein-coding gene annotations in GENCODE

Table 6 Switching of transcripts across versions

GENCODE version	Transcripts added	Transformed to lncRNAs	Transformed to PC transcripts	Transcripts deleted	Transformed from lncRNAs transcripts	Transformed from PC transcripts
1	–	–	–	–	–	–
2	13,568	7781	4336	2565	580	2000
2a	5580	3296	5354	3347	1834	96
2b	7069	1261	1687	12	7	0
v3b	26,715	3096	20,499	7087	2255	2049
v3c	4978	1611	2665	860	194	162
v3d	3581	3722	96	1206	189	1210
4	15,138	10,044	4073	6937	4498	2717
5	7065	4078	2662	822	593	521
6	10,409	6141	4261	798	714	1266
7	11,285	3874	8325	8392	3292	6519
8	5036	2933	1868	1344	155	1508
9	4568	2762	1677	217	178	282
10	3684	2284	1257	131	119	235
11	7817	5028	2530	520	855	322
12	3243	2069	1273	429	469	428
13	6734	4244	1679	6857	557	5660
14	7291	4314	2927	207	631	415
15	5749	3364	2201	367	384	278
16	628	649	311	2027	1271	1019
17	1469	1480	415	632	677	474
18	1055	940	385	339	481	275
19	1378	1289	474	442	582	334
20	9229	4125	4861	11,410	4324	7212
21	2218	2263	535	226	231	618
22	2873	1820	838	760	390	503
23	350	277	195	173	231	112
24	758	527	300	208	197	165

ISSN: 1479-7364