Haploblock and inferred haplotypes | Haplotype total frequency | Cases (HS) frequencies | Controls (HR) frequencies | P value (chi-square analysis) | P value, following 100 K permutations |
---|---|---|---|---|---|
AHR Block 1 | |||||
ACTTTC | 0.477 | 0.485 | 0.468 | 0.7405 | 1.00 |
AATTCC | 0.173 | 0.144 | 0.205 | 0.1069 | 0.6743 |
AACCTG | 0.14 | 0.178 | 0.100 | 0.0259 * | 0.142 |
AACTTG | 0.097 | 0.089 | 0.105 | 0.589 | 1.00 |
GCTTTC | 0.094 | 0.074 | 0.116 | 0.1598 | 0.8367 |
AATTTC | 0.01 | 0.015 | 0.005 | 0.3454 | 1.00 |
AHR Block 2 | |||||
GACTCAGGG | 0.231 | 0.232 | 0.231 | 0.9865 | 1.00 |
AGCTCAGGG | 0.198 | 0.193 | 0.205 | 0.7632 | 1.00 |
GATTTAAGG | 0.159 | 0.184 | 0.132 | 0.16 | 0.8367 |
GGCTCAGGG | 0.128 | 0.119 | 0.137 | 0.5925 | 1.00 |
GATCTAAGG | 0.081 | 0.073 | 0.089 | 0.5716 | 1.00 |
GATTCTGTA | 0.069 | 0.059 | 0.079 | 0.4451 | 1.00 |
GGCTCTGGG | 0.066 | 0.054 | 0.079 | 0.3323 | 1.00 |
GATCCAAGG | 0.033 | 0.030 | 0.037 | 0.6932 | 1.00 |
GATTCAGGA | 0.01 | 0.020 | 0.000 | 0.0512 | 0.3157 |
CYP1A1 | |||||
AACT | 0.656 | 0.649 | 0.663 | 0.7604 | 1.00 |
ACCT | 0.189 | 0.193 | 0.184 | 0.8228 | 1.00 |
GCCC | 0.094 | 0.104 | 0.084 | 0.5039 | 0.9829 |
ACTC | 0.054 | 0.045 | 0.063 | 0.4136 | 0.9422 |
CYP1A2 | |||||
GAT | 0.64 | 0.614 | 0.668 | 0.2606 | 0.8454 |
GCC | 0.286 | 0.292 | 0.279 | 0.7736 | 1.00 |
GAC | 0.048 | 0.059 | 0.037 | 0.2985 | 0.888 |
AAC | 0.026 | 0.035 | 0.016 | 0.2365 | 0.8278 |
CYP1B1 Block 1 | |||||
TTGG | 0.377 | 0.390 | 0.362 | 0.5704 | 1.00 |
GTAC | 0.249 | 0.276 | 0.220 | 0.1999 | 0.8872 |
TTAC | 0.207 | 0.179 | 0.238 | 0.1535 | 0.8046 |
TCGG | 0.161 | 0.144 | 0.179 | 0.3404 | 1.00 |
CYP1B1 Block 2 | |||||
ACTCGATT | 0.268 | 0.277 | 0.258 | 0.6658 | 1.00 |
CGTCGGTC | 0.258 | 0.248 | 0.268 | 0.6364 | 1.00 |
CGTTAGTC | 0.194 | 0.188 | 0.200 | 0.7667 | 1.00 |
CGCTGACC | 0.186 | 0.163 | 0.210 | 0.2309 | 0.9115 |
CGTCAATC | 0.036 | 0.054 | 0.016 | 0.0392 * | 0.1666 |
CGTTAATC | 0.015 | 0.015 | 0.016 | 0.9386 | 1.00 |
CGCTAGCC | 0.013 | 0.015 | 0.011 | 0.7029 | 1.00 |