TY - JOUR AU - Siliciano, R. F. AU - Greene, W. C. PY - 2011 DA - 2011// TI - HIV latency JO - Cold Spring Harb Perspect Med VL - 1 UR - https://doi.org/10.1101/cshperspect.a007096 DO - 10.1101/cshperspect.a007096 ID - Siliciano2011 ER - TY - JOUR AU - Finzi, D. PY - 1997 DA - 1997// TI - Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy JO - Science VL - 278 UR - https://doi.org/10.1126/science.278.5341.1295 DO - 10.1126/science.278.5341.1295 ID - Finzi1997 ER - TY - JOUR AU - Wong, J. K. PY - 1997 DA - 1997// TI - Recovery of replication-competent HIV despite prolonged suppression of plasma viremia JO - Science VL - 278 UR - https://doi.org/10.1126/science.278.5341.1291 DO - 10.1126/science.278.5341.1291 ID - Wong1997 ER - TY - JOUR AU - Finzi, D. PY - 1999 DA - 1999// TI - Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy JO - Nat Med VL - 5 UR - https://doi.org/10.1038/8394 DO - 10.1038/8394 ID - Finzi1999 ER - TY - JOUR AU - Kingsman, S. M. AU - Kingsman, A. J. PY - 1996 DA - 1996// TI - The regulation of human immunodeficiency virus type-1 gene expression JO - Eur J Biochem VL - 240 UR - https://doi.org/10.1111/j.1432-1033.1996.0491h.x DO - 10.1111/j.1432-1033.1996.0491h.x ID - Kingsman1996 ER - TY - JOUR AU - Jordan, A. AU - Bisgrove, D. AU - Verdin, E. PY - 2003 DA - 2003// TI - HIV reproducibly establishes a latent infection after acute infection of T cells in vitro JO - EMBO J VL - 22 UR - https://doi.org/10.1093/emboj/cdg188 DO - 10.1093/emboj/cdg188 ID - Jordan2003 ER - TY - JOUR AU - Felsenfeld, G. AU - Groudine, M. PY - 2003 DA - 2003// TI - Controlling the double helix JO - Nature VL - 421 UR - https://doi.org/10.1038/nature01411 DO - 10.1038/nature01411 ID - Felsenfeld2003 ER - TY - JOUR AU - Tamaru, H. PY - 2010 DA - 2010// TI - Confining euchromatin/heterochromatin territory: jumonji crosses the line JO - Genes Dev VL - 24 UR - https://doi.org/10.1101/gad.1941010 DO - 10.1101/gad.1941010 ID - Tamaru2010 ER - TY - JOUR AU - Jenuwein, T. AU - Allis, C. D. PY - 2001 DA - 2001// TI - Translating the histone code JO - Science VL - 293 UR - https://doi.org/10.1126/science.1063127 DO - 10.1126/science.1063127 ID - Jenuwein2001 ER - TY - JOUR AU - Park, J. PY - 2014 DA - 2014// TI - Genome-wide analysis of histone modifications in latently HIV-1 infected T cells JO - Aids VL - 28 UR - https://doi.org/10.1097/QAD.0000000000000309 DO - 10.1097/QAD.0000000000000309 ID - Park2014 ER - TY - JOUR AU - Lusic, M. AU - Giacca, M. PY - 2015 DA - 2015// TI - Regulation of HIV-1 latency by chromatin structure and nuclear architecture JO - J Mol Biol VL - 427 UR - https://doi.org/10.1016/j.jmb.2014.07.022 DO - 10.1016/j.jmb.2014.07.022 ID - Lusic2015 ER - TY - JOUR AU - Ay, E. PY - 2013 DA - 2013// TI - Epigenetics of HIV infection: promising research areas and implications for therapy JO - AIDS Rev VL - 15 ID - Ay2013 ER - TY - JOUR AU - Blazkova, J. PY - 2009 DA - 2009// TI - CpG methylation controls reactivation of HIV from latency JO - PLoS Pathog VL - 5 UR - https://doi.org/10.1371/journal.ppat.1000554 DO - 10.1371/journal.ppat.1000554 ID - Blazkova2009 ER - TY - JOUR AU - Blazkova, J. PY - 2012 DA - 2012// TI - Paucity of HIV DNA methylation in latently infected, resting CD4+ T cells from infected individuals receiving antiretroviral therapy JO - J Virol VL - 86 UR - https://doi.org/10.1128/JVI.00040-12 DO - 10.1128/JVI.00040-12 ID - Blazkova2012 ER - TY - JOUR AU - Verdin, E. AU - Paras, P. AU - Lint, C. PY - 1993 DA - 1993// TI - Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation JO - Embo j VL - 12 ID - Verdin1993 ER - TY - JOUR AU - Williams, S. A. PY - 2006 DA - 2006// TI - NF-kappaB p50 promotes HIV latency through HDAC recruitment and repression of transcriptional initiation JO - Embo j VL - 25 UR - https://doi.org/10.1038/sj.emboj.7600900 DO - 10.1038/sj.emboj.7600900 ID - Williams2006 ER - TY - JOUR AU - Zang, C. PY - 2009 DA - 2009// TI - A clustering approach for identification of enriched domains from histone modification ChIP-Seq data JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp340 DO - 10.1093/bioinformatics/btp340 ID - Zang2009 ER - TY - JOUR AU - Shin, H. PY - 2009 DA - 2009// TI - CEAS: cis-regulatory element annotation system JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp479 DO - 10.1093/bioinformatics/btp479 ID - Shin2009 ER - TY - JOUR AU - Wang, J. PY - 2013 DA - 2013// TI - WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013 JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gkt439 DO - 10.1093/nar/gkt439 ID - Wang2013 ER - TY - JOUR AU - Gronostajski, R. M. PY - 2000 DA - 2000// TI - Roles of the NFI/CTF gene family in transcription and development JO - Gene VL - 249 UR - https://doi.org/10.1016/S0378-1119(00)00140-2 DO - 10.1016/S0378-1119(00)00140-2 ID - Gronostajski2000 ER - TY - JOUR AU - Apt, D. AU - Liu, Y. AU - Bernard, H. U. PY - 1994 DA - 1994// TI - Cloning and functional analysis of spliced isoforms of human nuclear factor I-X: interference with transcriptional activation by NFI/CTF in a cell-type specific manner JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.19.3825 DO - 10.1093/nar/22.19.3825 ID - Apt1994 ER - TY - JOUR AU - Pereira, L. A. PY - 2000 DA - 2000// TI - A compilation of cellular transcription factor interactions with the HIV-1 LTR promoter JO - Nucleic Acids Res VL - 28 UR - https://doi.org/10.1093/nar/28.3.663 DO - 10.1093/nar/28.3.663 ID - Pereira2000 ER - TY - JOUR AU - Gaynor, R. PY - 1992 DA - 1992// TI - Cellular transcription factors involved in the regulation of HIV-1 gene expression JO - Aids VL - 6 UR - https://doi.org/10.1097/00002030-199204000-00001 DO - 10.1097/00002030-199204000-00001 ID - Gaynor1992 ER - TY - JOUR AU - Schwartz, C. PY - 1997 DA - 1997// TI - Characterization of nuclear proteins that bind to the regulatory TGATTGGC motif in the human immunodeficiency virus type 1 long terminal repeat JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.6.1177 DO - 10.1093/nar/25.6.1177 ID - Schwartz1997 ER - TY - JOUR AU - Henderson, A. J. AU - Connor, R. I. AU - Calame, K. L. PY - 1996 DA - 1996// TI - C/EBP activators are required for HIV-1 replication and proviral induction in monocytic cell lines JO - Immunity VL - 5 UR - https://doi.org/10.1016/S1074-7613(00)80313-1 DO - 10.1016/S1074-7613(00)80313-1 ID - Henderson1996 ER - TY - JOUR AU - Biressi, S. PY - 2007 DA - 2007// TI - Intrinsic phenotypic diversity of embryonic and fetal myoblasts is revealed by genome-wide gene expression analysis on purified cells JO - Dev Biol VL - 304 UR - https://doi.org/10.1016/j.ydbio.2007.01.016 DO - 10.1016/j.ydbio.2007.01.016 ID - Biressi2007 ER - TY - JOUR AU - Ye, X. PY - 1999 DA - 1999// TI - TRAF family proteins interact with the common neurotrophin receptor and modulate apoptosis induction JO - J Biol Chem VL - 274 UR - https://doi.org/10.1074/jbc.274.42.30202 DO - 10.1074/jbc.274.42.30202 ID - Ye1999 ER - TY - JOUR AU - Krajewska, M. PY - 1998 DA - 1998// TI - TRAF-4 expression in epithelial progenitor cells. Analysis in normal adult, fetal, and tumor tissues JO - Am J Pathol VL - 152 ID - Krajewska1998 ER - TY - JOUR AU - Xu, Y. C. PY - 2002 DA - 2002// TI - Involvement of TRAF4 in oxidative activation of c-Jun N-terminal kinase JO - J Biol Chem VL - 277 UR - https://doi.org/10.1074/jbc.M202665200 DO - 10.1074/jbc.M202665200 ID - Xu2002 ER - TY - JOUR AU - Heinz, S. PY - 2010 DA - 2010// TI - Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities JO - Mol Cell VL - 38 UR - https://doi.org/10.1016/j.molcel.2010.05.004 DO - 10.1016/j.molcel.2010.05.004 ID - Heinz2010 ER -