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Table 1 Numbers of islands identified by SICER 1.1 in HIV-1 latently infected cells according to histone modifications

From: Identification of novel genes associated with HIV-1 latency by analysis of histone modifications

Cell line

Dec or Inc

Histone modifications

H3K4me3

H3K9ac

ACH2

Dec

1587

3344

Inc

2078

5563

J1.1

Dec

8634

13,173

Inc

6941

9875

NCHA1

Dec

5275

7124

Inc

6622

8084

  1. Dec decreased islands identified by SICER 1.1, Inc increased islands identified by SICER 1.1, ACH2 and J1.1 HIV-1 latently infected cells, NCHA1 novel chronic HIV-1 infected cells derived from A3.01