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Table 1 Imaging mass spectrometry ionization techniques: application, advantages, and disadvantages [8, 9, 11].

From: Yale School of Public Health Symposium on tissue imaging mass spectrometry: illuminating phenotypic heterogeneity and drug disposition at the molecular level

Application

Ionization

Advantages

Disadvantages

Tissue molecular imaging

MALDI

• Label-free analysis

• High-sensitivity

• Use over a broad mass range

• High-spatial resolution (≤ 1 μm)

• Application on both formalin-fixed paraffin-embedded (FFPE) tissue microarrays and on fresh tissue samples.

• Low throughput

• Sample preparation can lead to spatial dislocation or chemical modifications

• Matrix dependent analysis

DESI

• Label-free analysis

• Ambient ionization method

• Direct solid surface sampling

• Multiple charged ions

• Minimal sample preparation

• Soft ionization method

• Generally less costly upon comparison to MALDI

• Imaging in the low-mass region—limited use for proteins

• Poorer spatial resolution compared to MALDI

• Solvent dependent