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Table 3 Results from a gene-based SNP set and multi-trait analysis

From: Multiple genotype–phenotype association study reveals intronic variant pair on SIDT2 associated with metabolic syndrome in a Korean population

Gene

The number of SNP

Chromosome

Position (hg19)

Maximum r2

P value

(a Bonferroni-adjusted P value of discovery stage P = 3.45 × 10−6)

Discovery

Replication

Meta P value

PAFAH1B2

rs12420127

11

117,035,319

0.466

4.00E-07

3.99E-03

3.39E-08

rs10790175

117,034,729

rs10892082

117,039,325

SIDT2

rs2269399

11

117,066,353

0.456

2.31E-07

3.83E-03

1.93E-08

rs1242229

117,062,370

rs1784042

117,065,476

rs7107152

117,056,080

CUX2

rs7952972

12

111,646,519

0.561

3.28E-10

6.34E-02

5.32E-10

rs886126

111,679,214

rs7300082

111,737,115

rs4766553

111,634,281

rs1265566

111,716,376

rs9783423

111,639,456

rs7398833

111,786,892

rs16941414

111,779,792

rs6489979

111,614,736

rs16941284

111,610,723

rs16941319

111,646,853

rs11065851

111,723,739

rs756825

111,598,202

rs7300860

111,754,597