Fig. 2From: Size matters: how sample size affects the reproducibility and specificity of gene set analysisPine plots for ORA and GAGE (dataset GSE53757) Pine plots for dataset GSE53757 showing reproducibility of the results from ORA (left) and GAGE (right). See Fig. 1 caption for more information. The pine plots suggest that the overlap between replicates is larger in comparison to that of GSEA-S and GSEA-G. GAGE has more agreement between replicates when using lower sample sizes such as 3 compared to the other methods shown (including in Fig. 1), and the overlap scores continue to improve for higher numbers of samplesBack to article page