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Fig. 2 | Human Genomics

Fig. 2

From: Size matters: how sample size affects the reproducibility and specificity of gene set analysis

Fig. 2

Pine plots for ORA and GAGE (dataset GSE53757) Pine plots for dataset GSE53757 showing reproducibility of the results from ORA (left) and GAGE (right). See Fig. 1 caption for more information. The pine plots suggest that the overlap between replicates is larger in comparison to that of GSEA-S and GSEA-G. GAGE has more agreement between replicates when using lower sample sizes such as 3 compared to the other methods shown (including in Fig. 1), and the overlap scores continue to improve for higher numbers of samples

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