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Table 3 Association results of 6 common variants

From: Identification of rare and common variants in BNIP3L: a schizophrenia susceptibility gene

SNP ID

Group

Allele frequency

Allelic P

Corrected Pa

OR

95% CI

Genotype frequency

Genotypic P

Corrected Pa

rs1055476

 

G

C

    

C/C

C/G

   

chr8:26383121

SCZ

35 (0.009)

3577 (0.990)

0.004**

0.179

3.245

[1.362~7.728]

1771 (0.980)

35 (0.019)

 

0.004**

0.174

 

Control

6 (0.003)

1990 (0.996)

    

992 (0.993)

6 (0.006)

   

rs147389989

 

-

TCTT

    

TCTT/TCTT

TCTT/-

-/-

  

chr8:26411153

SCZ

106 (0.029)

3506 (0.970)

6.52e−05**

0.007**

2.383

[1.536~3.698]

1701 (0.941)

104 (0.057)

1 (5.54e−04)

3.22e-04**

0.017*

 

Control

25 (0.012)

1971 (0.987)

    

973 (0.974)

25 (0.025)

   

rs17310286

 

T

C

    

C/C

T/C

T/T

  

chr8:26411516

SCZ

1462 (0.404)

2150 (0.595)

0.012*

0.266

1.154

[1.031~1.291]

636 (0.352)

878 (0.486)

292 (0.161)

0.028*

0.452

 

Control

740 (0.370)

1256 (0.629)

    

385 (0.385)

486 (0.486)

127 (0.127)

  

rs17055200

 

A

G

    

G/G

G/A

A/A

  

chr8:26411573

SCZ

134 (0.037)

3478 (0.962)

0.576

 

0.922

[0.695~1.223]

1673 (0.926)

132 (0.073)

1 (5.54e-04)

0.604

 
 

Control

80 (0.040)

1916 (0.959)

    

918 (0.919)

80 (0.080)

   

rs1042992

 

T

C

    

C/C

T/C

T/T

  

chr8:26411675

SCZ

1435 (0.397)

2177 (0.602)

0.581

 

1.031

[0.922~1.154]

662 (0.366)

853 (0.472)

291 (0.161)

0.385

 
 

Control

778 (0.389)

1218 (0.610)

    

363 (0.363)

492 (0.492)

143 (0.143)

  

rs10503786

 

T

C

    

C/C

C/T

T/T

  

chr8:26412420

SCZ

656 (0.181)

2956 (0.818)

0.833

 

1.015

[0.880~1.170]

1215 (0.672)

526 (0.291)

65 (0.035)

0.674

 
 

Control

358 (0.179)

1638 (0.820)

    

670 (0.671)

298 (0.298)

30 (0.030)

  
  1. SCZ schizophrenia, SNP single-nucleotide polymorphism, OR odds ratio, CI confidence interval
  2. *P values < 0.05
  3. **P values < 0.01
  4. aFDR correction