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Table 2 Examples of relevant omic databases

From: Standardized nomenclature and open science in Human Genomics

Type Name URL Comments
DNA Variants dbSNP https://www.ncbi.nlm.nih.gov/snp/ NCBI SNP (single nucleotide polymorphism) database
ClinVar https://www.ncbi.nlm.nih.gov/clinvar/ NCBI database on genomic variation and clinical phenotypes
LOVD (Leiden Open Variation Database) https://www.lovd.nl Open database for genetic variants
Proteomic Protein https://www.ncbi.nlm.nih.gov/protein/ NCBI protein databases
Proteomic Human Variants Database https://www.iitm.ac.in/bioinfo/huvarbase/ Human protein variants
Metabolomic Metabolights https://www.ebi.ac.uk/metabolights/ Open database of metabolomic experiments, derived metabolites, their structures and biological roles
Metabolomic GNPS https://gnps.ucsd.edu Mass spectrometry driven small molecule analysis