Table 2 Examples of relevant omic databases
From: Standardized nomenclature and open science in Human Genomics
| Type | Name | URL | Comments |
|---|---|---|---|
| DNA Variants | dbSNP | https://www.ncbi.nlm.nih.gov/snp/ | NCBI SNP (single nucleotide polymorphism) database |
| ClinVar | https://www.ncbi.nlm.nih.gov/clinvar/ | NCBI database on genomic variation and clinical phenotypes | |
| LOVD (Leiden Open Variation Database) | https://www.lovd.nl | Open database for genetic variants | |
| Proteomic | Protein | https://www.ncbi.nlm.nih.gov/protein/ | NCBI protein databases |
| Proteomic | Human Variants Database | https://www.iitm.ac.in/bioinfo/huvarbase/ | Human protein variants |
| Metabolomic | Metabolights | https://www.ebi.ac.uk/metabolights/ | Open database of metabolomic experiments, derived metabolites, their structures and biological roles |
| Metabolomic | GNPS | https://gnps.ucsd.edu | Mass spectrometry driven small molecule analysis |