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Table 2 Examples of relevant omic databases

From: Standardized nomenclature and open science in Human Genomics

Type

Name

URL

Comments

DNA Variants

dbSNP

https://www.ncbi.nlm.nih.gov/snp/

NCBI SNP (single nucleotide polymorphism) database

ClinVar

https://www.ncbi.nlm.nih.gov/clinvar/

NCBI database on genomic variation and clinical phenotypes

LOVD (Leiden Open Variation Database)

https://www.lovd.nl

Open database for genetic variants

Proteomic

Protein

https://www.ncbi.nlm.nih.gov/protein/

NCBI protein databases

Proteomic

Human Variants Database

https://www.iitm.ac.in/bioinfo/huvarbase/

Human protein variants

Metabolomic

Metabolights

https://www.ebi.ac.uk/metabolights/

Open database of metabolomic experiments, derived metabolites, their structures and biological roles

Metabolomic

GNPS

https://gnps.ucsd.edu

Mass spectrometry driven small molecule analysis