Skip to main content

Table 2 Examples of relevant omic databases

From: Standardized nomenclature and open science in Human Genomics

Type Name URL Comments
DNA Variants dbSNP NCBI SNP (single nucleotide polymorphism) database
ClinVar NCBI database on genomic variation and clinical phenotypes
LOVD (Leiden Open Variation Database) Open database for genetic variants
Proteomic Protein NCBI protein databases
Proteomic Human Variants Database Human protein variants
Metabolomic Metabolights Open database of metabolomic experiments, derived metabolites, their structures and biological roles
Metabolomic GNPS Mass spectrometry driven small molecule analysis