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Table 2 Top 20 hypomethylated genes in arthritic and non-arthritic knee cartilage samples ranked by logFC after GEO2R analysis

From: Cathelicidin antimicrobial peptide (CAMP) gene promoter methylation induces chondrocyte apoptosis

GENE_SYMBOL

p value

logFC

Up/Down

GUCY2D

0.00902988

4.21533489

Up

GPR23

0.01044718

4.10888772

Up

LMBR1L

0.0050466

4.06301737

Up

MOBP

0.02433125

3.81893625

Up

RASSF8

0.00004736

3.71186833

Up

SLC6A5

0.02136651

3.49741335

Up

ING4

0.00371036

3.40976791

Up

CDK5

0.01690306

3.39845271

Up

hsa-mir-29b-2

0.00810529

3.39799728

Up

PITX1

0.03355549

3.31112165

Up

TLE6

0.02379696

3.31057234

Up

IL22

0.02971686

3.29164562

Up

CDIPT

0.02299476

3.24065781

Up

FLJ10986

0.0034974

3.21953344

Up

KIAA1970

0.02280297

3.1642642

Up

GDF7

0.01267419

3.14401884

Up

CAB39L

0.00421281

3.13792295

Up

CHAF1B

0.00197712

3.13636909

Up

C15orf2

0.01644456

3.07462778

Up

TMPRSS6

0.04829902

3.06043658

Up

NDUFV3

0.01618486

− 3.45593987

Down

CINP

0.01970577

− 3.40575442

Down

ACOX3

0.0123907

− 3.09168387

Down

KLK15

0.00245482

− 3.01407804

Down

RP13-360B22.2

0.04529023

− 2.9067811

Down

C10orf120

0.04175249

− 2.85198326

Down

C10orf26

0.03356837

− 2.83509207

Down

ATP6AP2

0.00771311

− 2.81820993

Down

MED28

0.01218592

− 2.77282343

Down

ZDHHC16

0.0367154

− 2.75390711

Down

LOC57228

0.03643365

− 2.71534123

Down

C15orf5

0.00278977

− 2.67864013

Down

ALDH1A3

0.03431337

− 2.65248752

Down

DNMT2

0.03566104

− 2.64961214

Down

MGC41945

0.02997186

− 2.64282551

Down

ASF1B

0.0193366

− 2.62752981

Down

CAMP

0.01873345

− 2.62260485

Down

ZNF44

0.01006365

− 2.56469726

Down

IDS

0.00377758

− 2.56033268

Down

TCN2

0.01701305

− 2.53741851

Down

  1. FC, fold change