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Table 1 Results from the analysis of CNVs in 7 Turkish families

From: A comprehensive analysis of copy number variation in a Turkish dementia cohort

Family

Position

# SNPs

Length (bases)

CN

Family members with CNV

GnomAD-SV spanning the entire CNV?

Gene

Total # intersects with CNVs from UKBB dementia (CN=0|CN=1|CN=3|CN=4)

Total # intersects with CNVs from UKBB non-dementia (CN=0|CN=1|CN=3|CN=4)

Pathogenicity

C

Chr6:108570894-108694389

15

123,496

3

Affected siblings

Inversions in 2

AFG1L, SNX3

No overlap

No overlap

Uncertain significance

G

Chr7:12371801-12439672

35

67,872

3

Affected father and affected son

Loss of function deletion in 1

VWDE

No overlap

1 (0|0|1|0)

Uncertain significance

  1. CN copy number, 0 homozygous deletion, 1 heterozygous deletion, 3 duplication, 4 triplication. No UKBB CNVs were significantly associated with dementia based on Fisher’s exact test. Neither of these candidate CNVs intersected CNVs detected in the broader Turkish cohort