From: RNA modification-related variants in genomic loci associated with body mass index
SNP | Chromosome | Position | Gene | Gene type | Gene region | Effect allele | Other allele | Frequency | beta | se | P value | Confidence level | Modification function |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rs6713978 | 2 | 24,897,982 | ADCY3 | Protein coding | intron | T | C | 0.5593 | −0.0319 | 0.002 | 6.40E−60 | m6A-Label-seq: (High) | Functional Loss |
rs13410999 | 2 | 24,875,070 | ADCY3 | Protein coding | intron | T | C | 0.5548 | −0.0316 | 0.002 | 8.20E−59 | m6A-Label-seq: (High) | Functional Loss |
rs12716973 | 16 | 29,926,333 | KCTD13-DT | lncRNA | exon | A | G | 0.5435 | 0.0231 | 0.002 | 8.90E−32 | Prediction: (Low) | Functional Gain |
rs8024 | 1 | 201,876,446 | IPO9 | Protein coding | 3’-UTR | A | C | 0.337 | 0.0237 | 0.0021 | 8.00E−31 | miCLIP: (High) | Functional Loss |
rs7250850 | 19 | 47,082,263 | ZC3H4 | Protein coding | CDS | C | G | 0.7006 | 0.024 | 0.0022 | 1.50E−28 | Prediction: (Low) | Functional Gain |
rs1057233 | 11 | 47,354,898 | SPI1 | Protein coding | 3’-UTR | A | G | 0.6743 | −0.0222 | 0.0021 | 4.10E−26 | MeRIP-seq: (Medium) | Functional Loss |
rs4146689 | 10 | 21,987,890 | DNAJC1 | Protein coding | intron | A | C | 0.2778 | 0.0208 | 0.0022 | 5.30E−21 | m6A-Label-seq: (High) | Functional Loss |
rs4077410 | 16 | 29,986,877 | TAOK2 | Protein coding | CDS | A | G | 0.4751 | −0.0183 | 0.002 | 8.00E−21 | MeRIP-seq: (Medium) | Functional Loss |
rs2979247 | 8 | 9,031,438 | ERI1 | Protein coding | 3’-UTR | A | G | 0.5807 | −0.0185 | 0.002 | 2.00E−20 | Prediction: (Low) | Functional Loss |
rs13642 | 11 | 30,410,661 | MPPED2 | Protein coding | 3’-UTR | A | T | 0.6373 | 0.0183 | 0.002 | 2.30E−19 | Prediction: (Low) | Functional Gain |