From: RNA modification-related variants in genomic loci associated with body mass index
SNP | Chromosome | Position | Gene | Gene type | Gene region | Effect allele | Other allele | Frequency | beta | se | P value | Confidence level | Modification function |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rs17771942 | 2 | 46,762,123 | SOCS5 | Protein coding | 3’-UTR | A | T | 0.91347 | −0.0208 | 0.0034 | 7.40E−10 | m1A-quant-seq: (High) | Functional Loss |
rs1051436 | 3 | 88,052,380 | CGGBP1 | Protein coding | 3’-UTR | T | C | 0.1474 | −0.0187 | 0.0027 | 3.90E−12 | m1A-quant-seq: (High) | Functional Loss |
rs1569228 | 3 | 136,839,917 | SLC35G2 | Protein coding | intron | T | C | 0.3137 | −0.0129 | 0.0021 | 7.80E−10 | MeRIP-seq: (Medium) | Functional Loss |
rs1047643 | 8 | 11,802,853 | FDFT1 | Protein coding | CDS | T | C | 0.8391 | 0.0143 | 0.0026 | 3.40E−08 | MeRIP-seq: (Medium) | Functional Loss |
rs10902221 | 11 | 802,379 | PIDD1 | Protein coding | CDS | T | C | 0.4825 | −0.0118 | 0.002 | 1.80E−09 | m1A-quant-seq: (High) | Functional Loss |
rs3803286 | 14 | 102,780,133 | TRAF3 | Protein coding | intron | A | G | 0.3431 | 0.0193 | 0.0021 | 1.70E−20 | MeRIP-seq: (Medium) | Functional Loss |
rs9479 | 15 | 74,036,235 | PML | Protein coding | intron | A | G | 0.5001 | −0.0113 | 0.002 | 8.50E−09 | m1A-quant-seq: (High) | Functional Loss |
rs227584 | 17 | 44,148,179 | C17orf53 | Protein coding | CDS | A | C | 0.6945 | −0.0123 | 0.0021 | 9.50E−09 | m1A-quant-seq: (High) | Functional Loss |
rs8044 | 19 | 49,150,749 | HRC | Protein coding | 3’-UTR | T | G | 0.409 | 0.0127 | 0.002 | 2.40E−10 | MeRIP-seq: (Medium) | Functional Loss |
rs14194 | 21 | 39,177,540 | PSMG1 | Protein coding | CDS | T | C | 0.6435 | 0.0116 | 0.002 | 1.20E−08 | m1A-quant-seq: (High) | Functional Loss |