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Table 2 The significant BMI-associated SNPs related to m1A modification

From: RNA modification-related variants in genomic loci associated with body mass index

SNP

Chromosome

Position

Gene

Gene type

Gene region

Effect allele

Other allele

Frequency

beta

se

P value

Confidence level

Modification function

rs17771942

2

46,762,123

SOCS5

Protein coding

3’-UTR

A

T

0.91347

−0.0208

0.0034

7.40E−10

m1A-quant-seq: (High)

Functional Loss

rs1051436

3

88,052,380

CGGBP1

Protein coding

3’-UTR

T

C

0.1474

−0.0187

0.0027

3.90E−12

m1A-quant-seq: (High)

Functional Loss

rs1569228

3

136,839,917

SLC35G2

Protein coding

intron

T

C

0.3137

−0.0129

0.0021

7.80E−10

MeRIP-seq: (Medium)

Functional Loss

rs1047643

8

11,802,853

FDFT1

Protein coding

CDS

T

C

0.8391

0.0143

0.0026

3.40E−08

MeRIP-seq: (Medium)

Functional Loss

rs10902221

11

802,379

PIDD1

Protein coding

CDS

T

C

0.4825

−0.0118

0.002

1.80E−09

m1A-quant-seq: (High)

Functional Loss

rs3803286

14

102,780,133

TRAF3

Protein coding

intron

A

G

0.3431

0.0193

0.0021

1.70E−20

MeRIP-seq: (Medium)

Functional Loss

rs9479

15

74,036,235

PML

Protein coding

intron

A

G

0.5001

−0.0113

0.002

8.50E−09

m1A-quant-seq: (High)

Functional Loss

rs227584

17

44,148,179

C17orf53

Protein coding

CDS

A

C

0.6945

−0.0123

0.0021

9.50E−09

m1A-quant-seq: (High)

Functional Loss

rs8044

19

49,150,749

HRC

Protein coding

3’-UTR

T

G

0.409

0.0127

0.002

2.40E−10

MeRIP-seq: (Medium)

Functional Loss

rs14194

21

39,177,540

PSMG1

Protein coding

CDS

T

C

0.6435

0.0116

0.002

1.20E−08

m1A-quant-seq: (High)

Functional Loss