From: The impact of sample size and marker selection on the study of haplotype structures
Population B (African-Americ)†| ||||||
---|---|---|---|---|---|---|
# of blocks 9 | total # of Tag SNPs 19 | Â | Â | Â | ||
BlockID | NumTagSNP | StartPos | EndPos | BlockSize | NumHap | |
Block_0001 | 3 | 1 | 4 | 4 | 100 | |
Block_0002 | 2 | 5 | 9 | 5 | 100 | |
Block_0003 | 2 | 10 | 19 | 10 | 100 | |
Block_0004 | 2 | 20 | 24 | 5 | 100 | |
Block_0005 | 2 | 25 | 28 | 4 | 100 | |
Block_0006 | 2 | 29 | 33 | 5 | 100 | |
Block_0007 | 2 | 34 | 35 | 2 | 100 | |
Block_0008 | 2 | 36 | 43 | 8 | 100 | |
Block_0009 | 2 | 44 | 46 | 3 | 100 | |
Tag SNP for block_0001 | Â | Tag SNP for block_0005 | ||||
1 | 4 | 5 | 0.95825 | 27 | 29 | 0.91095 |
1 | 4 | 5 | 0.95825 - 1* | 27 | 29 | 0.91095 - 1* |
Tag SNP for block_0002 | Â | Tag SNP for block_0006 | ||||
7 | 10 | 0.94339 | Â | 31 | 33 | 0.90816 |
9 | 10 | 0.90594 | Â | 32 | 33 | 0.90614 |
7 | 10 | 0.94339 - 1* | Â | 31 | 33 | 0.90816 - 1* |
Tag SNP for block_0003 | Â | Tag SNP for block_0007 | ||||
11 | 15 | 0.93446 | Â | 36 | 37 | 1 |
11 | 17 | 0.93107 | Â | 36 | 37 | 1 - 1* |
11 | 18 | 0.93234 | Â | Â | Â | Â |
11 | 19 | 0.9346 | Â | Tag SNP for block_0008 | ||
15 | 20 | 0.92013 | Â | 40 | 42 | 0.90181 |
17 | 20 | 0.91561 | Â | 40 | 42 | 0.90181 - 1* |
18 | 20 | 0.91455 | Â | Â | Â | Â |
19 | 20 | 0.92754 | Â | Tag SNP for block_0009 | ||
11 | 19 | 0.9346 2 1* | Â | 46 | 47 | 0.93096 |
 |  |  |  | 46 | 48 | 0.92839 |
Tag SNP for block_0004 | Â | 46 | 47 | 0.93096 - 1* | ||
25 | 26 | 0.90927 | Â | Â | Â | Â |
25 | 26 | 0.90927 2 1* | Â | Â | Â | Â |
Population C (Japanese & Chinese)†|  |  |  | |||
# of blocks = 6 | Total # of TagSNPs = 10 | Â | Â | Â | ||
BlockID | NumTagSNP | StartPos | EndPos | BlockSize | NumHap | |
Block_0001 | 1 | 1 | 1 | 1 | 84 | |
Block_0002 | 2 | 2 | 22 | 21 | 84 | |
Block_0003 | 2 | 23 | 29 | 7 | 84 | |
Block_0004 | 2 | 30 | 34 | 5 | 84 | |
Block_0005 | 2 | 35 | 43 | 9 | 84 | |
Block_0006 | 1 | 44 | 45 | 2 | 84 | |
Tag SNP for block_0001 | Â | Tag SNP for block_0004 | ||||
1 | 1.00000 | Â | Â | 32 | 36 | 0.90335 |
1 | 1.00000 - 1* | Â | Â | 34 | 36 | 0.9073 |
 |  |  |  | 34 | 36 | 0.9073 - 1* |
Tag SNP for block_0002 | Â | Â | Â | Â | ||
7 | 15 | 0.96085 | Â | Tag SNP for block_0005 | ||
7 | 17 | 0.96085 | Â | 37 | 39 | 0.93032 |
7 | 18 | 0.96085 | Â | 37 | 40 | 0.92593 |
7 | 19 | 0.96085 | Â | 39 | 46 | 0.93265 |
7 | 15 | 0.96085 - 1* | Â | 40 | 46 | 0.92716 |
 |  |  |  | 39 | 46 | 0.93265 - 1* |
Tag SNP for block_0003 | Â | Â | Â | Â | ||
25 | 27 | 0.92191 | Â | Tag SNP for block_0006 | ||
25 | 31 | 0.90516 | Â | 48 | 0.95869 | Â |
26 | 27 | 0.92676 | Â | 48 | 0.95869 - 1* | Â |
26 | 31 | 0.91236 | Â | Â | Â | Â |
27 | 31 | 0.92645 | Â | Â | Â | Â |
26 | 27 | 0.92676 - 1* | Â | Â | Â | Â |