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Table 5 Region 52a (Chromosome 22, 237.22 kb)

From: The impact of sample size and marker selection on the study of haplotype structures

Population B (African-Americ)†
# of blocks 9 total # of Tag SNPs 19    
BlockID NumTagSNP StartPos EndPos BlockSize NumHap
Block_0001 3 1 4 4 100
Block_0002 2 5 9 5 100
Block_0003 2 10 19 10 100
Block_0004 2 20 24 5 100
Block_0005 2 25 28 4 100
Block_0006 2 29 33 5 100
Block_0007 2 34 35 2 100
Block_0008 2 36 43 8 100
Block_0009 2 44 46 3 100
Tag SNP for block_0001   Tag SNP for block_0005
1 4 5 0.95825 27 29 0.91095
1 4 5 0.95825 - 1* 27 29 0.91095 - 1*
Tag SNP for block_0002   Tag SNP for block_0006
7 10 0.94339   31 33 0.90816
9 10 0.90594   32 33 0.90614
7 10 0.94339 - 1*   31 33 0.90816 - 1*
Tag SNP for block_0003   Tag SNP for block_0007
11 15 0.93446   36 37 1
11 17 0.93107   36 37 1 - 1*
11 18 0.93234     
11 19 0.9346   Tag SNP for block_0008
15 20 0.92013   40 42 0.90181
17 20 0.91561   40 42 0.90181 - 1*
18 20 0.91455     
19 20 0.92754   Tag SNP for block_0009
11 19 0.9346 2 1*   46 47 0.93096
     46 48 0.92839
Tag SNP for block_0004   46 47 0.93096 - 1*
25 26 0.90927     
25 26 0.90927 2 1*     
Population C (Japanese & Chinese)†    
# of blocks = 6 Total # of TagSNPs = 10    
BlockID NumTagSNP StartPos EndPos BlockSize NumHap
Block_0001 1 1 1 1 84
Block_0002 2 2 22 21 84
Block_0003 2 23 29 7 84
Block_0004 2 30 34 5 84
Block_0005 2 35 43 9 84
Block_0006 1 44 45 2 84
Tag SNP for block_0001   Tag SNP for block_0004
1 1.00000    32 36 0.90335
1 1.00000 - 1*    34 36 0.9073
     34 36 0.9073 - 1*
Tag SNP for block_0002     
7 15 0.96085   Tag SNP for block_0005
7 17 0.96085   37 39 0.93032
7 18 0.96085   37 40 0.92593
7 19 0.96085   39 46 0.93265
7 15 0.96085 - 1*   40 46 0.92716
     39 46 0.93265 - 1*
Tag SNP for block_0003     
25 27 0.92191   Tag SNP for block_0006
25 31 0.90516   48 0.95869  
26 27 0.92676   48 0.95869 - 1*  
26 31 0.91236     
27 31 0.92645     
26 27 0.92676 - 1*     
  1. † Tag SNPs are in combined order.
  2. * - 1 lines indicate the Tag SNPs that scored the highest in each block by the HapBlock program.