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Table 2 Web-based haplotyping programs and related websites.

From: A comprehensive literature review of haplotyping software and methods for use with unrelated individuals

Haplotyping program Website Comments
GS-EM Assigns probability to genotype calls
   Constructs haplotypes using probabilities
HAPH Imperfect phylogeny method
   Handles missing data
OSLEM Modified EM algorithm that runs faster
   No missing data
PHASE v2.02 MCMC method
   Comparison HF between groups
   Handles missing data and recombination
SNPEM EM method
   Comparison HF between groups
SNPHAP EM method
   Handles missing data
Haplotyping-related websites   
Boas Center for Genomics and Human Genetics: North Shore LIJ Research Institute Comprehensive list of statistical genetics software
   Mirrored by Rockefeller site
International HapMap Project HapMap project news, data and information
Laboratory of Statistical Genetics at Rockefeller University Comprehensive list of statistical genetics software
   Mirror of North Shore LIJ site
MRC Rosalind Franklin Centre for Genomics Research Registration required
   Numerous programs available
Power for Association with Errors Calculates power and sample size in the presence of differing genotype error rates
PRL: Polymorphism Research Lab Additional information and links to all reviewed programs
The Wellcome Trust Centre for Human Genetics Several additional programs with links to their sources
  1. EM: Expectation maximisation algorithm; HF: Haplotype frequency estimate; MCMC: Markov Chain Monte Carlo algorithm, Bayesian.