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Table 3 Sixty-two probes with mapped gene symbols (out of 156 probe sets) and counts of occurrences in the top ten and top 156 using Caucasian dataset by resampling 100 times

From: Analysing breast cancer microarrays from African Americans using shrinkage-based discriminant analysis

Common targets

    

Top 10

Top 156

TES

     

0

5

MPP6

     

0

4

IL18RAP

     

0

3

KIAA0984

     

0

2

TRIM2

     

0

1

USP10

     

0

1

CREBL1, TNXB

     

0

1

PCBP2

     

0

1

MYO10

     

0

1

DCLRE1C

     

0

1

WDR48

     

0

1

The genes below all have zero counts (ie genes unique to African Americans)

    

IPO7

BLMH

MARCH7

ATP6V1C1

ATP6V1C1

GSTA4

0

0

KIAA0258

NDUFAF1

APOA1

RPS6KA5

RIMS3

HOXB7

0

0

(FTLL1, RNF24, PANK2)

(TCF21, FLJ35700)

ITIH2

CSNK2A1

0

0

PAX2

(NUDT4P1, NUDT4)

THRB

CENPF

ROS1

0

0

P2RY6

RBM10

CLCN7

MALL

CTNND2

TPO

0

0

MAPK9

EFS

LEF1

CCKAR

RIPK5

ATF2

0

0

(PDLIM5, TSSC1)

BAT2

ZNF204

PCDHB17

LTB4R

0

0

(RAD23A, CALR, KLF1, FARSA, GCDH, MAST1, DNASE2)

  

ZFX

0

0

(LOC93432, MGC138180, MGC138178)

UPF3A

LOC388335

LRRC51

0

0

SMARCA2

RAB31

(DSG1, GIN1)

HAND2

MS4A5

ATP5O

0

0

(LOC90379, MGC99481)

    

0

0