Table 2 Human sRNA datasets from deep sequencing
From: Databases and resources for human small non-coding RNAs
sRNA | Biology | Datasets |
|---|---|---|
TSSa RNAs | 20-90nt sRNAs, localised within -250 to +50 of TSSs. Similar to PASRs. Dataset included in deepBase | GSE13483[19] |
PASRs | Promoter-associated small RNAs. 20-200 nt long, with 5' ends coinciding with the TSSs | GSE14362[20] |
tiRNAs | 18 nt length sRNAs, localised downstream of TSS | http://fantom.gsc.riken.jp/4/download/ Supplemental_Materials/Taft_et_al_2009[21] |
spliRNAs | Nuclear sRNAs, enriched at splice sites | GSE20664[22] |
TASRNAs | Termini-associated sRNAs | GSE7576[23] |
aTASRNAs | Termini-associated sRNAs from the antisense strand | SRA012676[24] |
miRNAs | sRNA sequences from libraries from different human organ systems and cell types. Included in MirZ | GSE7233[18] |
miRNAs | miRNAs from HeLa cells. Dataset included in deepBase | GSE10829[25] |
miRNAs | miRNAs expressed in human leucocytes | GSE19833[26] |
sRNAs | sRNAs associated with AGO1 and AGO2, derived from snoRNAs and with miRNA-like functions. Dataset included in deepBase | GSE13370[27] |
sRNAs | Derived from tRNAs, in competition with miRNAs | 28-30 |
sRNAs | Derived from snoRNAs, with miRNA-like functions | 31 |