Viral expression associated with gastrointestinal adenocarcinomas in TCGA high-throughput sequencing data

Table 4 Counts of colorectal samples, positive (+) or negative (−) for identified viruses, within tumor’s DNA/RNA pairs

Sample type	Virus name	Tumor DNA (N = 117)		CI for two one-sided hypotheses (CL = 0.975)
Tumor RNA	EBV	+	−	0; 3.09	0.40; infinity
	+	15	9
	−	10	83
	CMV	+	−	0; 0.51*	0.01; infinity
	+	13	13
	−	1	90
	HHV-6B	+	−	0; 18.84	0.85; infinity
	+	2	3
	−	10	102
	HPV-18	+	−	0; 0.14*	0; infinity
	+	0	28	0; 0.14*	0; infinity
	−	0	89

N, number of matched pairs. *proportions are not equivalent at α = 0.05 after Bonferroni correction.

ISSN: 1479-7364