Table 3 The number of genes selected based on (a) bivariate mixture model, (b) conventional one-species approach
From: Mixture models for gene expression experiments with two species
| Â | Categories (1,2,3,4,5,6) | Categories (1,2,3,4,7,8) | ||||
|---|---|---|---|---|---|---|
| Â | Mixture | Avg FDR I | Human only | Mixture | Avg FDR II | Animal only |
sim1 | 132 | 0.034 | 100(0.070) | 129 | 0.029 | 96(0.063) |
sim2 | 224 | 0.003 | 145(0.021) | 223 | 0.012 | 188(0.016) |
sim3 | 113 | 0.246 | 85(0.318) | 135 | 0.048 | 109(0.073) |
sim4 | 166 | 0.050 | 115(0.043) | 222 | 0.012 | 188(0.016) |
sim5 | 132 | 0.028 | 98(0.041) | 234 | 0.004 | 238(0.012) |
sim6 | 227 | 0.011 | 194(0.021) | 289 | 0.003 | 289(0.007) |
sim7 | 112 | 0.235 | 78(0.282) | 241 | 0.011 | 246(0.020) |
sim8 | 167 | 0.048 | 124(0.065) | 288 | 0.002 | 288(0.007) |
Tukey’s HSD | 30.908 | 0.021 |  | 52.958 | 0.016 |  |
sim9 | 92 | 0.126 | 81(0.296) | 88 | 0.129 | 75(0.307) |
sim10 | 118 | 0.033 | 104(0.048) | 118 | 0.036 | 99(0.061) |
sim11 | 141 | 0.470 | 109(0.670) | 80 | 0.128 | 70(0.214) |
sim12 | 103 | 0.116 | 68(0.118) | 118 | 0.049 | 102(0.088) |
sim13 | 84 | 0.140 | 67(0.169) | 180 | 0.349 | 167(0.407) |
sim14 | 120 | 0.023 | 88(0.023) | 152 | 0.022 | 151(0.101) |
sim15 | 119 | 0.480 | 99(0.636) | 168 | 0.358 | 157(0.369) |
sim16 | 96 | 0.093 | 57(0.105) | 147 | 0.020 | 148(0.061) |
Tukey’s HSD | 3.947 | 0.011 |  | 2.337 | 0.004 |  |